CRAN Package Check Results for Package spaMM

Last updated on 2015-07-05 10:47:10.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5.1 26.28 69.36 95.64 NOTE
r-devel-linux-x86_64-debian-gcc 1.5.1 32.06 66.72 98.78 NOTE
r-devel-linux-x86_64-fedora-clang 1.5.1 198.66 NOTE
r-devel-linux-x86_64-fedora-gcc 1.5.1 193.38 NOTE
r-devel-osx-x86_64-clang 1.5.1 138.19 OK
r-devel-windows-ix86+x86_64 1.5.1 86.00 161.00 247.00 NOTE
r-patched-linux-x86_64 1.5.1 32.06 70.75 102.80 NOTE
r-patched-solaris-sparc 1.5.1 1249.50 NOTE
r-patched-solaris-x86 1.5.1 266.90 NOTE
r-release-linux-x86_64 1.5.1 31.91 71.47 103.38 NOTE
r-release-osx-x86_64-mavericks 1.5.1 NOTE
r-release-windows-ix86+x86_64 1.5.1 107.00 143.00 250.00 OK
r-oldrel-windows-ix86+x86_64 1.5.1 109.00 169.00 278.00 OK

Check Details

Version: 1.5.1
Check: installed package size
Result: NOTE
     installed size is 22.5Mb
     sub-directories of 1Mb or more:
     libs 21.8Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 1.5.1
Check: R code for possible problems
Result: NOTE
    Beta: no visible global function definition for ‘make.link’
    GammaForDispGammaGLM: no visible global function definition for
     ‘make.link’
    GammaForDispGammaGLM : aic: no visible global function definition for
     ‘dgamma’
    GammaForDispGammaGLM : simfun: no visible global function definition
     for ‘rgamma’
    HLCor.obj: Error while checking: invalid ‘envir’ argument
    HLfit: Error while checking: invalid ‘envir’ argument
    HLframes: no visible global function definition for ‘model.response’
    HLframes: no visible global function definition for ‘is.empty.model’
    HLframes: no visible global function definition for ‘model.matrix’
    HLframes: no visible binding for global variable ‘contrasts’
    Initialize.corMatern: no visible global function definition for
     ‘formula’
    LRT: no visible global function definition for ‘pchisq’
    Predictor: no visible global function definition for ‘as.formula’
    Predictor : <anonymous> : <anonymous>: no visible global function
     definition for ‘as.formula’
    asStandardFormula: no visible global function definition for
     ‘as.formula’
    auglinmodfit : compute.sscaled: no visible global function definition
     for ‘dnorm’
    calc.plot.dims: no visible global function definition for ‘par’
    checkRandLink: Error while checking: invalid ‘envir’ argument
    clean_cs: no visible global function definition for ‘head’
    confint.HLfit: no visible global function definition for ‘qchisq’
    confint.HLfit: no visible global function definition for ‘qnorm’
    corrHLfit: Error while checking: invalid ‘envir’ argument
    corrMM.LRT: no visible global function definition for ‘optim’
    corrMM.LRT: no visible global function definition for ‘optimize’
    corrMM.LRT: no visible global function definition for ‘pchisq’
    d2mudeta2fn: no visible global function definition for ‘dnorm’
    dispGammaGLM: no visible global function definition for ‘glm’
    eval.corrEst.args: no visible global function definition for
     ‘as.formula’
    extrapolhull: no visible global function definition for ‘runif’
    filled.mapMM: no visible global function definition for ‘as.formula’
    getCallHL: no visible global function definition for ‘getCall’
    getCovariate.corMatern: no visible global function definition for
     ‘formula’
    getCovariate.corMatern: no visible global function definition for
     ‘terms’
    getCovariate.corMatern: no visible global function definition for
     ‘model.matrix’
    getCovariate.corMatern: no visible global function definition for
     ‘model.frame’
    inverse.Gamma: no visible global function definition for ‘make.link’
    locoptim: no visible binding for global variable ‘nlminb’
    locoptim: no visible global function definition for ‘relist’
    locoptim: no visible binding for global variable ‘optimize’
    locoptimthroughSmooth : <anonymous>: no visible global function
     definition for ‘relist’
    locoptimthroughSmooth: no visible global function definition for
     ‘as.formula’
    locoptimthroughSmooth: Error while checking: invalid ‘envir’ argument
    makeCovEst2: no visible global function definition for ‘optim’
    multi: Error while checking: invalid ‘envir’ argument
    newetaFix: no visible global function definition for ‘model.offset’
    noOffset: no visible global function definition for ‘as.formula’
    noReForm: no visible global function definition for ‘is’
    plot.HLfit: no visible global function definition for ‘par’
    plot.HLfit: no visible global function definition for ‘dev.new’
    plot.HLfit: no visible global function definition for ‘loess.smooth’
    plot.HLfit: no visible global function definition for ‘lines’
    plot.HLfit: no visible global function definition for ‘qqnorm’
    plot.HLfit: no visible global function definition for ‘qqline’
    plot.HLfit: no visible global function definition for ‘hist’
    plot.HLfit: no visible global function definition for ‘title’
    plotScale: no visible global function definition for ‘plot.window’
    plotScale: no visible global function definition for ‘rect’
    plotScale: no visible global function definition for ‘axis’
    plotScale: no visible global function definition for ‘box’
    plotdhglm: no visible global function definition for ‘par’
    plotdhglm: no visible global function definition for ‘smooth.spline’
    plotdhglm: no visible global function definition for ‘lines’
    plotdhglm: no visible global function definition for ‘qqnorm’
    plotdhglm: no visible global function definition for ‘qqline’
    plotdhglm: no visible global function definition for ‘hist’
    post.process.ZALlist: no visible global function definition for ‘as’
    preprocess: Error while checking: invalid ‘envir’ argument
    recent.mapMM: no visible global function definition for ‘par’
    recent.mapMM: no visible global function definition for ‘layout’
    recent.mapMM: no visible global function definition for ‘lcm’
    recent.mapMM: no visible global function definition for ‘plot.new’
    recent.mapMM: no visible global function definition for ‘plot.window’
    recent.mapMM: no visible binding for global variable ‘title’
    recent.mapMM: no visible global function definition for ‘Axis’
    recent.mapMM: no visible global function definition for ‘box’
    rntneg: no visible global function definition for ‘runif’
    rntneg: no visible global function definition for ‘pnorm’
    rntneg: no visible global function definition for ‘qnorm’
    rsimplex: no visible global function definition for ‘runif’
    sampleNearby : <anonymous>: no visible global function definition for
     ‘runif’
    selectLoglfn : <anonymous>: no visible global function definition for
     ‘dgamma’
    simulate.HLfit: no visible global function definition for ‘runif’
    simulate.HLfit : <anonymous>: no visible global function definition for
     ‘rnorm’
    simulate.HLfit : <anonymous>: no visible global function definition for
     ‘rgamma’
    simulate.HLfit : <anonymous>: no visible global function definition for
     ‘rbeta’
    simulate.HLfit : respv: no visible global function definition for
     ‘rnorm’
    simulate.HLfit : respv: no visible global function definition for
     ‘rpois’
    simulate.HLfit : respv: no visible global function definition for
     ‘rbinom’
    simulate.HLfit : respv: no visible global function definition for
     ‘rgamma’
    simulate.HLfitlist: no visible global function definition for ‘runif’
    spMMFactorList : locfn: no visible global function definition for
     ‘as.formula’
    spMMFactorList : locfn: no visible global function definition for ‘as’
    spMMFactorList : locfn: no visible global function definition for
     ‘validObject’
    spMMFactorList : locfn: no visible global function definition for
     ‘model.matrix’
    spaMM.colors: no visible global function definition for ‘topo.colors’
    spaMM.colors: no visible global function definition for ‘col2rgb’
    spaMM.colors: no visible global function definition for ‘rgb’
    spaMM.filled.contour: no visible global function definition for ‘par’
    spaMM.filled.contour: no visible global function definition for
     ‘layout’
    spaMM.filled.contour: no visible global function definition for ‘lcm’
    spaMM.filled.contour: no visible global function definition for
     ‘plot.new’
    spaMM.filled.contour: no visible global function definition for
     ‘plot.window’
    spaMM.filled.contour: no visible global function definition for
     ‘.filled.contour’
    spaMM.filled.contour: no visible global function definition for ‘title’
    spaMM.filled.contour: no visible global function definition for ‘Axis’
    spaMM.filled.contour: no visible global function definition for ‘box’
    spaMMLRT: no visible global function definition for ‘pchisq’
    spaMMplot2D: no visible global function definition for ‘par’
    spaMMplot2D: no visible global function definition for ‘layout’
    spaMMplot2D: no visible global function definition for ‘lcm’
    spaMMplot2D: no visible global function definition for ‘plot.new’
    spaMMplot2D: no visible global function definition for ‘plot.window’
    spaMMplot2D: no visible binding for global variable ‘title’
    spaMMplot2D: no visible global function definition for ‘Axis’
    spaMMplot2D: no visible global function definition for ‘box’
    summary.HLfit: no visible global function definition for ‘as.formula’
    theta.mu.canonical: no visible global function definition for
     ‘make.link’
    update.HLfit: no visible global function definition for ‘formula’
    update.HLfit: no visible global function definition for
     ‘update.formula’
    validData: no visible global function definition for ‘as.formula’
    Undefined global functions or variables:
     .filled.contour Axis as as.formula axis box col2rgb contrasts dev.new
     dgamma dnorm formula getCall glm head hist is is.empty.model layout
     lcm lines loess.smooth make.link model.frame model.matrix
     model.offset model.response nlminb optim optimize par pchisq plot.new
     plot.window pnorm qchisq qnorm qqline qqnorm rbeta rbinom rect relist
     rgamma rgb rnorm rpois runif smooth.spline terms title topo.colors
     update.formula validObject
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.5.1
Check: R code for possible problems
Result: NOTE
    Beta: no visible global function definition for 'make.link'
    GammaForDispGammaGLM: no visible global function definition for
     'make.link'
    GammaForDispGammaGLM : aic: no visible global function definition for
     'dgamma'
    GammaForDispGammaGLM : simfun: no visible global function definition
     for 'rgamma'
    HLCor.obj: no visible global function definition for 'gaussian'
    HLCor.obj: no visible global function definition for 'relist'
    HLfit: no visible global function definition for 'gaussian'
    HLfit : SEMbetalambda: no visible global function definition for
     'rnorm'
    HLfit : SEMbetalambda: no visible global function definition for 'var'
    HLfit : provide.resglm: no visible global function definition for
     'as.formula'
    HLfit : provide.resglm: no visible global function definition for 'glm'
    HLfit : provide.resglm: no visible global function definition for
     'coefficients'
    HLfit : generateInitLambda: no visible global function definition for
     'resid'
    HLfit : generateInitLambda: no visible global function definition for
     'deviance'
    HLfit : generateInitLambda : <anonymous>: no visible global function
     definition for 'uniroot'
    HLfit : makeCovEst1: no visible global function definition for 'optim'
    HLfit: no visible global function definition for 'coefficients'
    HLfit: no visible global function definition for 'as'
    HLfit: no visible global function definition for 'deviance'
    HLfit: no visible global function definition for 'dnorm'
    HLframes: no visible global function definition for 'model.response'
    HLframes: no visible global function definition for 'is.empty.model'
    HLframes: no visible global function definition for 'model.matrix'
    HLframes: no visible binding for global variable 'contrasts'
    Initialize.corMatern: no visible global function definition for
     'formula'
    LRT: no visible global function definition for 'pchisq'
    Predictor: no visible global function definition for 'as.formula'
    Predictor : <anonymous> : <anonymous>: no visible global function
     definition for 'as.formula'
    asStandardFormula: no visible global function definition for
     'as.formula'
    auglinmodfit : compute.sscaled: no visible global function definition
     for 'dnorm'
    calc.plot.dims: no visible global function definition for 'par'
    checkRandLink: no visible global function definition for 'gaussian'
    checkRandLink: no visible global function definition for 'Gamma'
    clean_cs: no visible global function definition for 'head'
    confint.HLfit: no visible global function definition for 'qchisq'
    confint.HLfit: no visible global function definition for 'qnorm'
    corrHLfit: no visible global function definition for 'gaussian'
    corrHLfit: no visible global function definition for 'title'
    corrHLfit: no visible global function definition for 'points'
    corrHLfit : <anonymous>: no visible global function definition for
     'polygon'
    corrHLfit: no visible global function definition for 'dnorm'
    corrHLfit: no visible global function definition for 'pnorm'
    corrMM.LRT: no visible global function definition for 'optim'
    corrMM.LRT: no visible global function definition for 'optimize'
    corrMM.LRT: no visible global function definition for 'pchisq'
    d2mudeta2fn: no visible global function definition for 'dnorm'
    dispGammaGLM: no visible global function definition for 'glm'
    eval.corrEst.args: no visible global function definition for
     'as.formula'
    extrapolhull: no visible global function definition for 'runif'
    filled.mapMM: no visible global function definition for 'as.formula'
    getCallHL: no visible global function definition for 'getCall'
    getCovariate.corMatern: no visible global function definition for
     'formula'
    getCovariate.corMatern: no visible global function definition for
     'terms'
    getCovariate.corMatern: no visible global function definition for
     'model.matrix'
    getCovariate.corMatern: no visible global function definition for
     'model.frame'
    inverse.Gamma: no visible global function definition for 'make.link'
    locoptim: no visible binding for global variable 'nlminb'
    locoptim: no visible global function definition for 'relist'
    locoptim: no visible binding for global variable 'optimize'
    locoptimthroughSmooth : <anonymous>: no visible global function
     definition for 'relist'
    locoptimthroughSmooth: no visible global function definition for
     'as.formula'
    locoptimthroughSmooth: no visible global function definition for
     'Gamma'
    locoptimthroughSmooth: no visible global function definition for
     'optimize'
    locoptimthroughSmooth: no visible global function definition for
     'optim'
    makeCovEst2: no visible global function definition for 'optim'
    multi: no visible global function definition for 'binomial'
    newetaFix: no visible global function definition for 'model.offset'
    noOffset: no visible global function definition for 'as.formula'
    noReForm: no visible global function definition for 'is'
    plot.HLfit: no visible global function definition for 'par'
    plot.HLfit: no visible global function definition for 'dev.new'
    plot.HLfit: no visible global function definition for 'loess.smooth'
    plot.HLfit: no visible global function definition for 'lines'
    plot.HLfit: no visible global function definition for 'qqnorm'
    plot.HLfit: no visible global function definition for 'qqline'
    plot.HLfit: no visible global function definition for 'hist'
    plot.HLfit: no visible global function definition for 'title'
    plotScale: no visible global function definition for 'plot.window'
    plotScale: no visible global function definition for 'rect'
    plotScale: no visible global function definition for 'axis'
    plotScale: no visible global function definition for 'box'
    plotdhglm: no visible global function definition for 'par'
    plotdhglm: no visible global function definition for 'smooth.spline'
    plotdhglm: no visible global function definition for 'lines'
    plotdhglm: no visible global function definition for 'qqnorm'
    plotdhglm: no visible global function definition for 'qqline'
    plotdhglm: no visible global function definition for 'hist'
    post.process.ZALlist: no visible global function definition for 'as'
    preprocess: no visible global function definition for 'Gamma'
    preprocess: no visible global function definition for 'var'
    preprocess: no visible global function definition for 'model.offset'
    preprocess: no visible global function definition for 'model.frame'
    preprocess: no visible global function definition for 'as.formula'
    recent.mapMM: no visible global function definition for 'par'
    recent.mapMM: no visible global function definition for 'layout'
    recent.mapMM: no visible global function definition for 'lcm'
    recent.mapMM: no visible global function definition for 'plot.new'
    recent.mapMM: no visible global function definition for 'plot.window'
    recent.mapMM: no visible binding for global variable 'title'
    recent.mapMM: no visible global function definition for 'Axis'
    recent.mapMM: no visible global function definition for 'box'
    rntneg: no visible global function definition for 'runif'
    rntneg: no visible global function definition for 'pnorm'
    rntneg: no visible global function definition for 'qnorm'
    rsimplex: no visible global function definition for 'runif'
    sampleNearby : <anonymous>: no visible global function definition for
     'runif'
    selectLoglfn : <anonymous>: no visible global function definition for
     'dgamma'
    simulate.HLfit: no visible global function definition for 'runif'
    simulate.HLfit : <anonymous>: no visible global function definition for
     'rnorm'
    simulate.HLfit : <anonymous>: no visible global function definition for
     'rgamma'
    simulate.HLfit : <anonymous>: no visible global function definition for
     'rbeta'
    simulate.HLfit : respv: no visible global function definition for
     'rnorm'
    simulate.HLfit : respv: no visible global function definition for
     'rpois'
    simulate.HLfit : respv: no visible global function definition for
     'rbinom'
    simulate.HLfit : respv: no visible global function definition for
     'rgamma'
    simulate.HLfitlist: no visible global function definition for 'runif'
    spMMFactorList : locfn: no visible global function definition for
     'as.formula'
    spMMFactorList : locfn: no visible global function definition for 'as'
    spMMFactorList : locfn: no visible global function definition for
     'validObject'
    spMMFactorList : locfn: no visible global function definition for
     'model.matrix'
    spaMM.colors: no visible global function definition for 'topo.colors'
    spaMM.colors: no visible global function definition for 'col2rgb'
    spaMM.colors: no visible global function definition for 'rgb'
    spaMM.filled.contour: no visible global function definition for 'par'
    spaMM.filled.contour: no visible global function definition for
     'layout'
    spaMM.filled.contour: no visible global function definition for 'lcm'
    spaMM.filled.contour: no visible global function definition for
     'plot.new'
    spaMM.filled.contour: no visible global function definition for
     'plot.window'
    spaMM.filled.contour: no visible global function definition for
     '.filled.contour'
    spaMM.filled.contour: no visible global function definition for 'title'
    spaMM.filled.contour: no visible global function definition for 'Axis'
    spaMM.filled.contour: no visible global function definition for 'box'
    spaMMLRT: no visible global function definition for 'pchisq'
    spaMMplot2D: no visible global function definition for 'par'
    spaMMplot2D: no visible global function definition for 'layout'
    spaMMplot2D: no visible global function definition for 'lcm'
    spaMMplot2D: no visible global function definition for 'plot.new'
    spaMMplot2D: no visible global function definition for 'plot.window'
    spaMMplot2D: no visible binding for global variable 'title'
    spaMMplot2D: no visible global function definition for 'Axis'
    spaMMplot2D: no visible global function definition for 'box'
    summary.HLfit: no visible global function definition for 'as.formula'
    theta.mu.canonical: no visible global function definition for
     'make.link'
    update.HLfit: no visible global function definition for 'formula'
    update.HLfit: no visible global function definition for
     'update.formula'
    validData: no visible global function definition for 'as.formula'
    Undefined global functions or variables:
     .filled.contour Axis Gamma as as.formula axis binomial box
     coefficients col2rgb contrasts dev.new deviance dgamma dnorm formula
     gaussian getCall glm head hist is is.empty.model layout lcm lines
     loess.smooth make.link model.frame model.matrix model.offset
     model.response nlminb optim optimize par pchisq plot.new plot.window
     pnorm points polygon qchisq qnorm qqline qqnorm rbeta rbinom rect
     relist resid rgamma rgb rnorm rpois runif smooth.spline terms title
     topo.colors uniroot update.formula validObject var
Flavor: r-devel-windows-ix86+x86_64

Version: 1.5.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘lme4’
Flavor: r-release-osx-x86_64-mavericks