CRAN Package Check Results for Package sparcl

Last updated on 2015-05-04 11:48:11.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.3 0.88 16.56 17.44 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.3 0.84 16.56 17.40 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.3 34.66 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.3 32.22 NOTE
r-devel-osx-x86_64-clang 1.0.3 32.75 NOTE
r-devel-windows-ix86+x86_64 1.0.3 6.00 38.00 44.00 OK
r-patched-linux-x86_64 1.0.3 0.88 16.79 17.67 NOTE
r-patched-solaris-sparc 1.0.3 242.60 OK
r-patched-solaris-x86 1.0.3 50.50 NOTE
r-release-linux-x86_64 1.0.3 0.85 16.45 17.30 NOTE
r-release-osx-x86_64-mavericks 1.0.3 OK
r-release-osx-x86_64-snowleopard 1.0.3 OK
r-release-windows-ix86+x86_64 1.0.3 4.00 47.00 51.00 OK
r-oldrel-windows-ix86+x86_64 1.0.3 7.00 40.00 47.00 OK

Check Details

Version: 1.0.3
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.HierarchicalSparseCluster plot.HierarchicalSparseCluster.permute
     plot.KMeansSparseCluster plot.KMeansSparseCluster.permute
     print.HierarchicalSparseCluster
     print.HierarchicalSparseCluster.permute print.KMeansSparseCluster
     print.KMeansSparseCluster.permute
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0.3
Check: Rd line widths
Result: NOTE
    Rd file 'ColorDendrogram.Rd':
     \usage lines wider than 90 characters:
     ColorDendrogram(hc, y, main = "", branchlength = 0.7, labels = NULL, xlab = NULL, sub = NULL, ylab = "", cex.main = NULL)
    
    Rd file 'HierarchicalSparseCluster.Rd':
     \usage lines wider than 90 characters:
     HierarchicalSparseCluster(x=NULL, dists=NULL,method=c("average","complete", "single","centroid"),
     wbound=NULL,niter=15,dissimilarity=c("squared.distance","absolute.value"), uorth=NULL,silent=FALSE,
     \examples lines wider than 100 characters:
     # faster than sparsehc <- HierarchicalSparseCluster(x=x,wbound=perm.out$bestw, method="complete")
     sparsehc <- HierarchicalSparseCluster(dists=perm.out$dists, wbound=perm.out$bestw, method="complete", dissimilarity="absolute.value")
    
    Rd file 'HierarchicalSparseCluster.permute.Rd':
     \examples lines wider than 100 characters:
     sparsehc <- HierarchicalSparseCluster(dists=perm.out$dists, wbound=perm.out$bestw, method="complete")
    
    Rd file 'HierarchicalSparseCluster.wrapper.Rd':
     \usage lines wider than 90 characters:
     HierarchicalSparseCluster.wrapper(file, method=c("average", "complete", "single", "centroid"),
     "single","centroid"),output.cluster.files=TRUE,outputfile.prefix=NULL,maxnumgenes=5000,standardize.arrays=TRUE)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64