CRAN Package Check Results for Package spatstat

Last updated on 2016-09-29 04:47:36.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.46-1 97.97 430.04 528.02 ERROR --no-tests
r-devel-linux-x86_64-debian-gcc 1.46-1 90.99 430.47 521.45 ERROR --no-tests
r-devel-linux-x86_64-fedora-clang 1.46-1 1248.19 ERROR
r-devel-linux-x86_64-fedora-gcc 1.46-1 1197.35 ERROR
r-devel-macos-x86_64-clang 1.46-1 949.13 ERROR
r-devel-windows-ix86+x86_64 1.46-1 339.00 1459.00 1798.00 ERROR
r-patched-linux-x86_64 1.46-1 88.65 419.88 508.53 ERROR --no-tests
r-patched-solaris-sparc 1.46-1 7582.00 NOTE
r-patched-solaris-x86 1.46-1 1631.60 NOTE
r-release-linux-x86_64 1.46-1 92.10 417.72 509.82 ERROR --no-tests
r-release-osx-x86_64-mavericks 1.46-1 NOTE
r-release-windows-ix86+x86_64 1.46-1 305.00 1215.00 1520.00 ERROR
r-oldrel-windows-ix86+x86_64 1.45-2 335.00 1754.00 2089.00 NOTE

Check Details

Version: 1.46-1
Flags: --no-tests
Check: installed package size
Result: NOTE
     installed size is 19.8Mb
     sub-directories of 1Mb or more:
     R 3.7Mb
     data 3.4Mb
     doc 5.0Mb
     help 4.9Mb
     libs 1.6Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.46-1
Flags: --no-tests
Check: examples
Result: ERROR
    Running examples in ‘spatstat-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: lgcp.estpcf
    > ### Title: Fit a Log-Gaussian Cox Point Process by Minimum Contrast
    > ### Aliases: lgcp.estpcf
    > ### Keywords: spatial models
    >
    > ### ** Examples
    >
    > data(redwood)
    > u <- lgcp.estpcf(redwood, c(var=1, scale=0.1))
    Warning: Some values of the empirical function ‘g’ were infinite or NA. Range of r values was reset to [0.00048828125, 0.25]
    > u
    Minimum contrast fit (object of class “minconfit”)
    Model: log-Gaussian Cox process
     Covariance model: exponential
    Fitted by matching theoretical g function to pcf(redwood)
    
    Internal parameters fitted by minimum contrast ($par):
     sigma2 alpha
    1.29729152 0.07112984
    
    Fitted covariance parameters:
     var scale
    1.29729152 0.07112984
    
    Converged successfully after 59 function evaluations
    
    Starting values of parameters:
    sigma2 alpha
     1.0 0.1
    Domain of integration: [ 0.0004883 , 0.25 ]
    Exponents: p= 2, q= 0.25
    > plot(u)
    > if(require(RandomFields)) {
    + lgcp.estpcf(redwood, covmodel=list(model="matern", nu=0.3))
    + }
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    This is RandomFieldsUtils Version: 0.3.3
    This is RandomFields Version: 3.1.24
    
    Attaching package: ‘RandomFields’
    
    The following object is masked from ‘package:RandomFieldsUtils’:
    
     RFoptions
    
    The following object is masked from ‘package:nlme’:
    
     Variogram
    
    The following objects are masked from ‘package:base’:
    
     abs, acosh, asin, asinh, atan, atan2, atanh, cos, cosh, exp, expm1,
     floor, gamma, lgamma, log, log1p, log2, logb, max, min, round, sin,
     sinh, sqrt, tan, tanh, trunc
    
    Warning: Some values of the empirical function ‘g’ were infinite or NA. Range of r values was reset to [0.00048828125, 0.25]
    Error in lapply(.External(C_RFoptions, ...), function(x) { :
     Unknown option 'asList'.
    Calls: lgcp.estpcf ... internal.rfoptions -> <Anonymous> -> lapply -> .External
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.46-1
Check: installed package size
Result: NOTE
     installed size is 19.8Mb
     sub-directories of 1Mb or more:
     R 3.7Mb
     data 3.4Mb
     doc 5.0Mb
     help 4.8Mb
     libs 1.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.46-1
Check: examples
Result: ERROR
    Running examples in ‘spatstat-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: lgcp.estpcf
    > ### Title: Fit a Log-Gaussian Cox Point Process by Minimum Contrast
    > ### Aliases: lgcp.estpcf
    > ### Keywords: spatial models
    >
    > ### ** Examples
    >
    > data(redwood)
    > u <- lgcp.estpcf(redwood, c(var=1, scale=0.1))
    Warning: Some values of the empirical function ‘g’ were infinite or NA. Range of r values was reset to [0.00048828125, 0.25]
    > u
    Minimum contrast fit (object of class “minconfit”)
    Model: log-Gaussian Cox process
     Covariance model: exponential
    Fitted by matching theoretical g function to pcf(redwood)
    
    Internal parameters fitted by minimum contrast ($par):
     sigma2 alpha
    1.29729152 0.07112984
    
    Fitted covariance parameters:
     var scale
    1.29729152 0.07112984
    
    Converged successfully after 59 function evaluations
    
    Starting values of parameters:
    sigma2 alpha
     1.0 0.1
    Domain of integration: [ 0.0004883 , 0.25 ]
    Exponents: p= 2, q= 0.25
    > plot(u)
    > if(require(RandomFields)) {
    + lgcp.estpcf(redwood, covmodel=list(model="matern", nu=0.3))
    + }
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    This is RandomFieldsUtils Version: 0.3.3
    This is RandomFields Version: 3.1.24
    
    Attaching package: ‘RandomFields’
    
    The following object is masked from ‘package:RandomFieldsUtils’:
    
     RFoptions
    
    The following object is masked from ‘package:nlme’:
    
     Variogram
    
    The following objects are masked from ‘package:base’:
    
     abs, acosh, asin, asinh, atan, atan2, atanh, cos, cosh, exp, expm1,
     floor, gamma, lgamma, log, log1p, log2, logb, max, min, round, sin,
     sinh, sqrt, tan, tanh, trunc
    
    Warning: Some values of the empirical function ‘g’ were infinite or NA. Range of r values was reset to [0.00048828125, 0.25]
    Error in lapply(.External(C_RFoptions, ...), function(x) { :
     Unknown option 'asList'.
    Calls: lgcp.estpcf ... internal.rfoptions -> <Anonymous> -> lapply -> .External
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.46-1
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'spatstat-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: lgcp.estpcf
    > ### Title: Fit a Log-Gaussian Cox Point Process by Minimum Contrast
    > ### Aliases: lgcp.estpcf
    > ### Keywords: spatial models
    >
    > ### ** Examples
    >
    > data(redwood)
    > u <- lgcp.estpcf(redwood, c(var=1, scale=0.1))
    Warning: Some values of the empirical function 'g' were infinite or NA. Range of r values was reset to [0.00048828125, 0.25]
    > u
    Minimum contrast fit (object of class "minconfit")
    Model: log-Gaussian Cox process
     Covariance model: exponential
    Fitted by matching theoretical g function to pcf(redwood)
    
    Internal parameters fitted by minimum contrast ($par):
     sigma2 alpha
    1.29729152 0.07112984
    
    Fitted covariance parameters:
     var scale
    1.29729152 0.07112984
    
    Converged successfully after 59 function evaluations
    
    Starting values of parameters:
    sigma2 alpha
     1.0 0.1
    Domain of integration: [ 0.0004883 , 0.25 ]
    Exponents: p= 2, q= 0.25
    > plot(u)
    > if(require(RandomFields)) {
    + lgcp.estpcf(redwood, covmodel=list(model="matern", nu=0.3))
    + }
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    This is RandomFieldsUtils Version: 0.3.3
    This is RandomFields Version: 3.1.24
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    The following object is masked from 'package:nlme':
    
     Variogram
    
    The following objects are masked from 'package:base':
    
     abs, acosh, asin, asinh, atan, atan2, atanh, cos, cosh, exp, expm1,
     floor, gamma, lgamma, log, log1p, log2, logb, max, min, round, sin,
     sinh, sqrt, tan, tanh, trunc
    
    Warning: Some values of the empirical function 'g' were infinite or NA. Range of r values was reset to [0.00048828125, 0.25]
    Error in lapply(.External(C_RFoptions, ...), function(x) { :
     Unknown option 'asList'.
    Calls: lgcp.estpcf ... internal.rfoptions -> <Anonymous> -> lapply -> .External
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 1.46-1
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'spatstat-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: lgcp.estpcf
    > ### Title: Fit a Log-Gaussian Cox Point Process by Minimum Contrast
    > ### Aliases: lgcp.estpcf
    > ### Keywords: spatial models
    >
    > ### ** Examples
    >
    > data(redwood)
    > u <- lgcp.estpcf(redwood, c(var=1, scale=0.1))
    Warning: Some values of the empirical function 'g' were infinite or NA. Range of r values was reset to [0.00048828125, 0.25]
    > u
    Minimum contrast fit (object of class "minconfit")
    Model: log-Gaussian Cox process
     Covariance model: exponential
    Fitted by matching theoretical g function to pcf(redwood)
    
    Internal parameters fitted by minimum contrast ($par):
     sigma2 alpha
    1.29729152 0.07112984
    
    Fitted covariance parameters:
     var scale
    1.29729152 0.07112984
    
    Converged successfully after 59 function evaluations
    
    Starting values of parameters:
    sigma2 alpha
     1.0 0.1
    Domain of integration: [ 0.0004883 , 0.25 ]
    Exponents: p= 2, q= 0.25
    > plot(u)
    > if(require(RandomFields)) {
    + lgcp.estpcf(redwood, covmodel=list(model="matern", nu=0.3))
    + }
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    This is RandomFieldsUtils Version: 0.3.3
    This is RandomFields Version: 3.1.24
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    The following object is masked from 'package:nlme':
    
     Variogram
    
    The following objects are masked from 'package:base':
    
     abs, acosh, asin, asinh, atan, atan2, atanh, cos, cosh, exp, expm1,
     floor, gamma, lgamma, log, log1p, log2, logb, max, min, round, sin,
     sinh, sqrt, tan, tanh, trunc
    
    Warning: Some values of the empirical function 'g' were infinite or NA. Range of r values was reset to [0.00048828125, 0.25]
    Error in lapply(.External(C_RFoptions, ...), function(x) { :
     Unknown option 'asList'.
    Calls: lgcp.estpcf ... internal.rfoptions -> <Anonymous> -> lapply -> .External
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 1.46-1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RandomFields’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.46-1
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘RandomFields’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.46-1
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 1.45-2
Check: installed package size
Result: NOTE
     installed size is 19.2Mb
     sub-directories of 1Mb or more:
     R 3.7Mb
     data 3.4Mb
     doc 5.0Mb
     help 4.8Mb
     libs 1.2Mb
Flavor: r-oldrel-windows-ix86+x86_64