CRAN Package Check Results for Package spdep

Last updated on 2015-04-27 15:46:47.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.5-88 7.08 171.44 178.52 NOTE
r-devel-linux-x86_64-debian-gcc 0.5-88 7.21 170.16 177.37 NOTE
r-devel-linux-x86_64-fedora-clang 0.5-88 355.08 NOTE
r-devel-linux-x86_64-fedora-gcc 0.5-88 331.49 NOTE
r-devel-osx-x86_64-clang 0.5-88 286.46 NOTE
r-devel-windows-ix86+x86_64 0.5-88 42.00 310.00 352.00 NOTE
r-patched-linux-x86_64 0.5-88 7.26 168.29 175.55 NOTE
r-patched-solaris-sparc 0.5-88 1825.30 NOTE
r-patched-solaris-x86 0.5-88 413.10 NOTE
r-release-linux-x86_64 0.5-88 7.30 163.82 171.11 NOTE
r-release-osx-x86_64-mavericks 0.5-88 ERROR
r-release-osx-x86_64-snowleopard 0.5-88 ERROR
r-release-windows-ix86+x86_64 0.5-88 55.00 400.00 455.00 NOTE
r-oldrel-windows-ix86+x86_64 0.5-88 32.00 320.00 352.00 NOTE

Check Details

Version: 0.5-88
Check: installed package size
Result: NOTE
     installed size is 5.4Mb
     sub-directories of 1Mb or more:
     data 1.1Mb
     doc 1.5Mb
     etc 1.7Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.5-88
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘nb_igraph.Rmd’
     ...
    [1] -0.3212551 0.1638329
    
    > library(igraph)
    Warning: S3 methods ‘[.igraph’, ‘[[.igraph’, ‘[<-.igraph’, ‘+.igraph’, ‘-.igraph’, ‘$.igraph’, ‘$<-.igraph’, ‘$.igraph.vs’, ‘[.igraph.vs’, ‘[[.igraph.vs’, ‘[<-.igraph.vs’, ‘[[<-.igraph.vs’, ‘$<-.igraph.vs’, ‘$.igraph.es’, ‘[.igraph.es’, ‘[[.igraph.es’, ‘[<-.igraph.es’, ‘[[<-.igraph.es’, ‘$<-.igraph.es’, ‘print.igraph.vs’, ‘print.igraph.es’, ‘str.igraph’, ‘print.communities’, ‘modularity.communities’, ‘length.communities’, ‘as.dendrogram.communities’, ‘as.hclust.communities’, ‘asPhylo.communities’, ‘modularity.igraph’, ‘dendPlot.communities’, ‘compare.communities’, ‘compare.numeric’, ‘compare.default’, ‘rglplot.igraph’, ‘layout.svd.igraph’, ‘print.cohesiveBlocks’, ‘summary.cohesiveBlocks’, ‘plot.cohesiveBlocks’, ‘length.cohesiveBlocks’, ‘print.igraphHRG’, ‘print.igraphHRGConsensus’, ‘as.dendrogram.igraphHRG’, ‘as.hclust.igraphHR [... truncated]
    Error in namespaceExport(ns, exports) :
     undefined exports: add.vertices, delete.edges, delete.vertices, ecount, neighbors, incident, get.edges, get.edge.ids, [.igraph, [[.igraph, [<-.igraph, edge, edges, vertex, vertices, path, +.igraph, -.igraph, get.graph.attribute, set.graph.attribute, graph.attributes, get.vertex.attribute, set.vertex.attribute, vertex.attributes, get.edge.attribute, set.edge.attribute, edge.attributes, list.graph.attributes, list.vertex.attributes, list.edge.attributes, remove.graph.attribute, remove.vertex.attribute, remove.edge.attribute, graph.attributes<-, vertex.attributes<-, edge.attributes<-, V, E, $.igraph.vs, $.igraph.es, [.igraph.vs, [[.igraph.vs, [.igraph.es, [[.igraph.es, [<-.igraph.vs, [<-.igraph.es, [[<-.igraph.vs, [[<-.igraph.es, $<-.igraph.vs, $<-.igraph.es, V<-, E<-, print.igraph.vs, print.igraph.es, %--%, %->%, %<-%, is.igraph, is.named, is.weighted, is.bipartite, are.connected, print.igraph, str.igraph, summary.igraph, is.directed, get.edge, graph, graph.adjacency, graph.star, graph.tree, graph.lattice, graph.ring, graph.full, graph.atlas, graph.data.frame, graph.edgelist, graph.extended.chordal.ring, line.graph, graph.de.bruijn, graph.kautz, graph.formula, graph.famous, erdos.renyi.game, random.graph.game, degree.sequence.game, aging.prefatt.game, aging.barabasi.game, aging.ba.game, growing.random.game, barabasi.game, ba.game, callaway.traits.game, establishment.game, grg.game, preference.game, asymmetric.preference.game, connect.neighborhood, rewire.edges, watts.strogatz.game, lastcit.game, cited.type.game, citing.cited.type.game, bipartite.random.game, edge.betweenness.community, spinglass.community, walktrap.community, edge.betweenness.community.merges, fastgreedy.community, community.to.membership, membership, modularity, sizes, algorithm, is.hierarchical, merges, cutat, communities, crossing, plot.communities, compare, compare.communities, showtrace, code.length, asPhylo, dendPlot, create.communities, get.adjacency, get.edgelist, as.directed, as.undirected, get.adjlist, get.adjedgelist, igraph.from.graphNEL, igraph.to.graphNEL, get.data.frame, power.law.fit, running.mean, igraph.sample, srand, read.graph, write.graph, graph.graphdb, layout.auto, layout.random, layout.circle, layout.spring, layout.kamada.kawai, layout.lgl, layout.fruchterman.reingold.grid, layout.sphere, layout.merge, layout.reingold.tilford, layout.norm, piecewise.layout, igraph.drl.default, igraph.drl.coarsen, igraph.drl.coarsest, igraph.drl.refine, igraph.drl.final, subgraph, degree, degree.distribution, diameter, subcomponent, betweenness, bibcoupling, cocitation, shortest.paths, minimum.spanning.tree, get.shortest.paths, average.path.length, transitivity, get.all.shortest.paths, get.diameter, farthest.nodes, constraint, page.rank, reciprocity, rewire, graph.density, neighborhood.size, neighborhood, graph.neighborhood, graph.coreness, topological.sort, girth, is.loop, is.multiple, count.multiple, plot.igraph, tkplot, tkplot.close, tkplot.off, tkplot.fit.to.screen, tkplot.reshape, tkplot.export.postscript, tkplot.getcoords, tkplot.center, tkplot.rotate, tkplot.canvas, tkplot.setcoords, rglplot.igraph, rglplot, autocurve.edges, vertex.shapes, add.vertex.shape, igraph.shape.noclip, igraph.shape.noplot, cluster.distribution, is.connected, decompose.graph, no.clusters, evcent, bonpow, alpha.centrality, subgraph.centrality, igraph.arpack.default, igraph.eigen.default, revolver.d, revolver.error.d, revolver.ad, revolver.error.ad, revolver.ade, revolver.error.ade, revolver.e, revolver.error.e, revolver.de, revolver.error.de, revolver.l, revolver.error.l, revolver.dl, revolver.error.dl, revolver.el, revolver.error.el, revolver.r, revolver.error.r, revolver.ar, revolver.error.ar, revolver.di, revolver.error.di, revolver.adi, revolver.error.adi, revolver.il, revolver.error.il, revolver.ir, revolver.error.ir, revolver.air, revolver.error.air, revolver.d.d, revolver.p.p, evolver.d, graph.isoclass, graph.isomorphic, graph.motifs, graph.motifs.est, graph.isocreate, graph.motifs.no, graph.isomorphic.vf2, graph.subisomorphic.vf2, graph.count.isomorphisms.vf2, graph.count.subisomorphisms.vf2, graph.get.isomorphisms.vf2, graph.get.subisomorphisms.vf2, graph.disjoint.union, %du%, graph.intersection, %s%, graph.union, %u%, graph.difference, %m%, graph.complementer, graph.compose, %c%, igraph.par, igraph.options, getIgraphOpt, igraphtest, igraph.version, igraph.console, .igraph.progress, .igraph.status, graph.mincut, vertex.connectivity, edge.connectivity, edge.disjoint.paths, vertex.disjoint.paths, graph.adhesion, graph.cohesion, cliques, largest.cliques, maximal.cliques, clique.number, independent.vertex.sets, largest.independent.vertex.sets, maximal.independent.vertex.sets, independence.number, layout.svd, blocks, blockGraphs, cohesion, hierarchy, parent, plotHierarchy, exportPajek, maxcohesion, arpack, tkigraph, igraphdemo, scg, nexus.get, nexus.list, nexus.info, nexus.search, as.igraph, graphlets, graphlets.project, plot.sir, time_bins, graph.empty, add.edges, vcount, graph.full.citation, graph.lcf, graph.adjlist, graph.full.bipartite, forest.fire.game, interconnected.islands.game, static.fitness.game, static.power.law.game, k.regular.game, sbm.game, closeness, closeness.estimate, betweenness.estimate, edge.betweenness, edge.betweenness.estimate, page.rank.old, induced.subgraph, subgraph.edges, path.length.hist, simplify, is.dag, is.simple, has.multiple, hub.score, authority.score, arpack.unpack.complex, unfold.tree, is.mutual, maximum.cardinality.search, is.chordal, graph.knn, graph.strength, centralize.scores, centralization.degree, centralization.degree.tmax, centralization.betweenness, centralization.betweenness.tmax, centralization.closeness, centralization.closeness.tmax, centralization.evcent, centralization.evcent.tmax, assortativity.nominal, assortativity, assortativity.degree, contract.vertices, eccentricity, radius, graph.diversity, is.degree.sequence, is.graphical.degree.sequence, graph.bfs, graph.dfs, bipartite.projection.size, bipartite.projection, graph.bipartite, graph.incidence, get.incidence, bipartite.mapping, graph.laplacian, clusters, articulation.points, biconnected.components, maximal.cliques.count, layout.star, layout.grid, layout.grid.3d, layout.fruchterman.reingold, layout.graphopt, layout.drl, layout.sugiyama, layout.mds, layout.bipartite, similarity.jaccard, similarity.dice, similarity.invlogweighted, community.le.to.membership, mod.matrix, leading.eigenvector.community, label.propagation.community, multilevel.community, optimal.community, hrg.fit, hrg.game, hrg.dendrogram, hrg.consensus, hrg.predict, hrg.create, infomap.community, graphlets.candidate.basis, get.stochastic, dyad.census, triad.census, adjacent.triangles, graph.maxflow, dominator.tree, stCuts, stMincuts, is.separator, is.minimal.separator, minimal.st.separators, minimum.size.separators, cohesive.blocks, graph.isoclass.subgraph, graph.isomorphic.34, canonical.permutation, permute.vertices, graph.isomorphic.bliss, graph.automorphisms, graph.subisomorphic.lad, scgGrouping, scgSemiProjectors, scgNormEps, is.matching, is.maximal.matching, maximum.bipartite.matching, graph.eigen, sir, convex.hull, revolver.ml.d, revolver.probs.d, revolver.ml.de, revolver.probs.de, revolver.ml.ade, revolver.probs.ade, revolver.ml.f, revolver.ml.df, revolver.ml.l, revolver.ml.ad, revolver.probs.ad, revolver.ml.D.alpha, revolver.ml.D.alpha.a, revolver.ml.DE.alpha.a, revolver.ml.AD.alpha.a.beta, revolver.ml.AD.dpareto, revolver.ml.AD.dpareto.eval, revolver.ml.ADE.alpha.a.beta, revolver.ml.ADE.dpareto, revolver.ml.ADE.dpareto.eval, revolver.ml.ADE.dpareto.evalf, revolver.probs.ADE.dpareto
    
     When sourcing ‘nb_igraph.R’:
    Error: package or namespace load failed for ‘igraph’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.5-88
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Error in namespaceExport(ns, exports) :
     undefined exports: add.vertices, delete.edges, delete.vertices, ecount, neighbors, incident, get.edges, get.edge.ids, [.igraph, [[.igraph, [<-.igraph, edge, edges, vertex, vertices, path, +.igraph, -.igraph, get.graph.attribute, set.graph.attribute, graph.attributes, get.vertex.attribute, set.vertex.attribute, vertex.attributes, get.edge.attribute, set.edge.attribute, edge.attributes, list.graph.attributes, list.vertex.attributes, list.edge.attributes, remove.graph.attribute, remove.vertex.attribute, remove.edge.attribute, graph.attributes<-, vertex.attributes<-, edge.attributes<-, V, E, $.igraph.vs, $.igraph.es, [.igraph.vs, [[.igraph.vs, [.igraph.es, [[.igraph.es, [<-.igraph.vs, [<-.igraph.es, [[<-.igraph.vs, [[<-.igraph.es, $<-.igraph.vs, $<-.igraph.es, V<-, E<-, print.igraph.vs, print.igraph.es, %--%, %->%, %<-%, is.igraph, is.named, is.weighted, is.bipartite, are.connected, print.igraph, str.igraph, summary.igraph, is.directed, get.edge, graph, graph.adjacency, graph.star, graph.tree, graph.lattice, graph.ring, graph.full, graph.atlas, graph.data.frame, graph.edgelist, graph.extended.chordal.ring, line.graph, graph.de.bruijn, graph.kautz, graph.formula, graph.famous, erdos.renyi.game, random.graph.game, degree.sequence.game, aging.prefatt.game, aging.barabasi.game, aging.ba.game, growing.random.game, barabasi.game, ba.game, callaway.traits.game, establishment.game, grg.game, preference.game, asymmetric.preference.game, connect.neighborhood, rewire.edges, watts.strogatz.game, lastcit.game, cited.type.game, citing.cited.type.game, bipartite.random.game, edge.betweenness.community, spinglass.community, walktrap.community, edge.betweenness.community.merges, fastgreedy.community, community.to.membership, membership, modularity, sizes, algorithm, is.hierarchical, merges, cutat, communities, crossing, plot.communities, compare, compare.communities, showtrace, code.length, asPhylo, dendPlot, create.communities, get.adjacency, get.edgelist, as.directed, as.undirected, get.adjlist, get.adjedgelist, igraph.from.graphNEL, igraph.to.graphNEL, get.data.frame, power.law.fit, running.mean, igraph.sample, srand, read.graph, write.graph, graph.graphdb, layout.auto, layout.random, layout.circle, layout.spring, layout.kamada.kawai, layout.lgl, layout.fruchterman.reingold.grid, layout.sphere, layout.merge, layout.reingold.tilford, layout.norm, piecewise.layout, igraph.drl.default, igraph.drl.coarsen, igraph.drl.coarsest, igraph.drl.refine, igraph.drl.final, subgraph, degree, degree.distribution, diameter, subcomponent, betweenness, bibcoupling, cocitation, shortest.paths, minimum.spanning.tree, get.shortest.paths, average.path.length, transitivity, get.all.shortest.paths, get.diameter, farthest.nodes, constraint, page.rank, reciprocity, rewire, graph.density, neighborhood.size, neighborhood, graph.neighborhood, graph.coreness, topological.sort, girth, is.loop, is.multiple, count.multiple, plot.igraph, tkplot, tkplot.close, tkplot.off, tkplot.fit.to.screen, tkplot.reshape, tkplot.export.postscript, tkplot.getcoords, tkplot.center, tkplot.rotate, tkplot.canvas, tkplot.setcoords, rglplot.igraph, rglplot, autocurve.edges, vertex.shapes, add.vertex.shape, igraph.shape.noclip, igraph.shape.noplot, cluster.distribution, is.connected, decompose.graph, no.clusters, evcent, bonpow, alpha.centrality, subgraph.centrality, igraph.arpack.default, igraph.eigen.default, revolver.d, revolver.error.d, revolver.ad, revolver.error.ad, revolver.ade, revolver.error.ade, revolver.e, revolver.error.e, revolver.de, revolver.error.de, revolver.l, revolver.error.l, revolver.dl, revolver.error.dl, revolver.el, revolver.error.el, revolver.r, revolver.error.r, revolver.ar, revolver.error.ar, revolver.di, revolver.error.di, revolver.adi, revolver.error.adi, revolver.il, revolver.error.il, revolver.ir, revolver.error.ir, revolver.air, revolver.error.air, revolver.d.d, revolver.p.p, evolver.d, graph.isoclass, graph.isomorphic, graph.motifs, graph.motifs.est, graph.isocreate, graph.motifs.no, graph.isomorphic.vf2, graph.subisomorphic.vf2, graph.count.isomorphisms.vf2, graph.count.subisomorphisms.vf2, graph.get.isomorphisms.vf2, graph.get.subisomorphisms.vf2, graph.disjoint.union, %du%, graph.intersection, %s%, graph.union, %u%, graph.difference, %m%, graph.complementer, graph.compose, %c%, igraph.par, igraph.options, getIgraphOpt, igraphtest, igraph.version, igraph.console, .igraph.progress, .igraph.status, graph.mincut, vertex.connectivity, edge.connectivity, edge.disjoint.paths, vertex.disjoint.paths, graph.adhesion, graph.cohesion, cliques, largest.cliques, maximal.cliques, clique.number, independent.vertex.sets, largest.independent.vertex.sets, maximal.independent.vertex.sets, independence.number, layout.svd, blocks, blockGraphs, cohesion, hierarchy, parent, plotHierarchy, exportPajek, maxcohesion, arpack, tkigraph, igraphdemo, scg, nexus.get, nexus.list, nexus.info, nexus.search, as.igraph, graphlets, graphlets.project, plot.sir, time_bins, graph.empty, add.edges, vcount, graph.full.citation, graph.lcf, graph.adjlist, graph.full.bipartite, forest.fire.game, interconnected.islands.game, static.fitness.game, static.power.law.game, k.regular.game, sbm.game, closeness, closeness.estimate, betweenness.estimate, edge.betweenness, edge.betweenness.estimate, page.rank.old, induced.subgraph, subgraph.edges, path.length.hist, simplify, is.dag, is.simple, has.multiple, hub.score, authority.score, arpack.unpack.complex, unfold.tree, is.mutual, maximum.cardinality.search, is.chordal, graph.knn, graph.strength, centralize.scores, centralization.degree, centralization.degree.tmax, centralization.betweenness, centralization.betweenness.tmax, centralization.closeness, centralization.closeness.tmax, centralization.evcent, centralization.evcent.tmax, assortativity.nominal, assortativity, assortativity.degree, contract.vertices, eccentricity, radius, graph.diversity, is.degree.sequence, is.graphical.degree.sequence, graph.bfs, graph.dfs, bipartite.projection.size, bipartite.projection, graph.bipartite, graph.incidence, get.incidence, bipartite.mapping, graph.laplacian, clusters, articulation.points, biconnected.components, maximal.cliques.count, layout.star, layout.grid, layout.grid.3d, layout.fruchterman.reingold, layout.graphopt, layout.drl, layout.sugiyama, layout.mds, layout.bipartite, similarity.jaccard, similarity.dice, similarity.invlogweighted, community.le.to.membership, mod.matrix, leading.eigenvector.community, label.propagation.community, multilevel.community, optimal.community, hrg.fit, hrg.game, hrg.dendrogram, hrg.consensus, hrg.predict, hrg.create, infomap.community, graphlets.candidate.basis, get.stochastic, dyad.census, triad.census, adjacent.triangles, graph.maxflow, dominator.tree, stCuts, stMincuts, is.separator, is.minimal.separator, minimal.st.separators, minimum.size.separators, cohesive.blocks, graph.isoclass.subgraph, graph.isomorphic.34, canonical.permutation, permute.vertices, graph.isomorphic.bliss, graph.automorphisms, graph.subisomorphic.lad, scgGrouping, scgSemiProjectors, scgNormEps, is.matching, is.maximal.matching, maximum.bipartite.matching, graph.eigen, sir, convex.hull, revolver.ml.d, revolver.probs.d, revolver.ml.de, revolver.probs.de, revolver.ml.ade, revolver.probs.ade, revolver.ml.f, revolver.ml.df, revolver.ml.l, revolver.ml.ad, revolver.probs.ad, revolver.ml.D.alpha, revolver.ml.D.alpha.a, revolver.ml.DE.alpha.a, revolver.ml.AD.alpha.a.beta, revolver.ml.AD.dpareto, revolver.ml.AD.dpareto.eval, revolver.ml.ADE.alpha.a.beta, revolver.ml.ADE.dpareto, revolver.ml.ADE.dpareto.eval, revolver.ml.ADE.dpareto.evalf, revolver.probs.ADE.dpareto
    Quitting from lines 183-191 (nb_igraph.Rmd)
    Error: processing vignette 'nb_igraph.Rmd' failed with diagnostics:
    package or namespace load failed for 'igraph'
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.5-88
Check: package dependencies
Result: ERROR
    Packages suggested but not available for checking: ‘spam’ ‘igraph’ ‘knitr’
    
    VignetteBuilder package required for checking but not installed: ‘knitr’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-snowleopard