CRAN Package Check Results for Package sperich

Last updated on 2014-09-01 14:46:41.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5-5 0.75 20.81 21.56 NOTE
r-devel-linux-x86_64-debian-gcc 1.5-5 0.73 21.51 22.24 NOTE
r-devel-linux-x86_64-fedora-clang 1.5-5 46.39 NOTE
r-devel-linux-x86_64-fedora-gcc 1.5-5 43.24 NOTE
r-devel-osx-x86_64-clang 1.5-5 41.35 NOTE
r-devel-windows-ix86+x86_64 1.5-5 2.00 30.00 32.00 NOTE
r-patched-linux-x86_64 1.5-5 0.77 26.09 26.86 NOTE
r-patched-solaris-sparc 1.5-5 293.50 NOTE
r-patched-solaris-x86 1.5-5 64.70 NOTE
r-release-linux-ix86 1.5-5 1.09 30.93 32.02 NOTE
r-release-linux-x86_64 1.5-5 0.78 22.47 23.25 NOTE
r-release-osx-x86_64-mavericks 1.5-5 ERROR
r-release-windows-ix86+x86_64 1.5-5 2.00 35.00 37.00 NOTE
r-oldrel-windows-ix86+x86_64 1.5-5 4.00 33.00 37.00 NOTE

Check Details

Version: 1.5-5
Check: dependencies in R code
Result: NOTE
    ':::' calls which should be '::':
     ‘foreach:::getDoParRegistered’ ‘foreach:::registerDoSEQ’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5-5
Check: R code for possible problems
Result: NOTE
    createImage: no visible global function definition for ‘brewer.pal’
    createImage: no visible global function definition for
     ‘trellis.par.set’
    createImage: no visible global function definition for ‘levelplot’
    exportAsGDAL: no visible global function definition for ‘coordinates<-’
    exportAsGDAL: no visible global function definition for ‘writeGDAL’
    searchClusters: no visible global function definition for
     ‘coordinates<-’
    species.richness: no visible global function definition for ‘%dopar%’
    species.richness: no visible global function definition for ‘foreach’
    species.richness.cv: no visible global function definition for
     ‘%dopar%’
    species.richness.cv: no visible global function definition for
     ‘foreach’
    species.richness.nonweighted: no visible global function definition for
     ‘%dopar%’
    species.richness.nonweighted: no visible global function definition for
     ‘foreach’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.5-5
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘index’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.5-5
Check: Rd line widths
Result: NOTE
    Rd file 'createImage.Rd':
     \examples lines wider than 100 characters:
     landwatermask.nocoast, distances=1:5, weight=0.5, dimension,
     shift, resolution=1, upperbound=3000, all.species=1:2)
    
    Rd file 'exportAsGDAL.Rd':
     \usage lines wider than 90 characters:
     exportAsGDAL(grid, shift, resolution, directory=getwd(), filename="grid.tif", drivername="GTiff")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.5-5
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘rgdal’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.5-5
Check: R code for possible problems
Result: NOTE
    exportAsGDAL: no visible global function definition for ‘coordinates<-’
    exportAsGDAL: no visible global function definition for ‘writeGDAL’
    searchClusters: no visible global function definition for
     ‘coordinates<-’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.5-5
Check: examples
Result: ERROR
    Running examples in ‘sperich-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: adjustment
    > ### Title: Adjustment of interpolated species richness
    > ### Aliases: adjustment
    >
    > ### ** Examples
    >
    > ##load data
    > data(dataset.all.species)
    > data(dataset.landwater)
    >
    > ##create grid parameters
    > dimension <- getDimension(dataset.all.species, resolution=1)
    > shift <- getShift(dataset.all.species)
    >
    > ##create landwatermask
    > landwatermask.nocoast <- createLandwatermask(dataset.landwater,
    + dimension, shift, resolution=1)
    >
    > ##estimate species richness
    > species.richness.weighted <- species.richness(dataset.all.species,
    + landwatermask.nocoast, distances=1:5, weight=0.5, dimension, shift, resolution=1,
    + upperbound=5, all.species=1:2)
    >
    > ##prepare adjustment
    > noninterpolatedgrid <- createNonInterpolatedGrid(dataset.all.species,
    + dimension, shift, resolution=1, all.species=-1)
    > clusterlimit <- 100
    >
    > clusterlist <- searchClusters(species.richness.weighted,
    + dimension, shift, resolution=1, clusterlimit)
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘rgdal’
    Error in searchClusters(species.richness.weighted, dimension, shift, resolution = 1, :
     Package rgdal not available!
    Execution halted
Flavor: r-release-osx-x86_64-mavericks