CRAN Package Check Results for Package spikeSlabGAM

Last updated on 2015-07-06 08:48:26.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-8 2.44 26.46 28.90 NOTE --no-vignettes
r-devel-linux-x86_64-debian-gcc 1.1-8 2.89 25.81 28.70 NOTE --no-vignettes
r-devel-linux-x86_64-fedora-clang 1.1-8 586.85 NOTE --no-build-vignettes
r-devel-linux-x86_64-fedora-gcc 1.1-8 613.33 NOTE --no-build-vignettes
r-devel-osx-x86_64-clang 1.1-8 297.57 NOTE --no-build-vignettes
r-devel-windows-ix86+x86_64 1.1-8 11.00 88.00 99.00 NOTE --no-vignettes
r-patched-linux-x86_64 1.1-8 2.93 25.92 28.85 NOTE --no-vignettes
r-patched-solaris-sparc 1.1-8 333.30 NOTE --no-examples --no-vignettes
r-patched-solaris-x86 1.1-8 76.30 NOTE --no-vignettes
r-release-linux-x86_64 1.1-8 2.91 26.08 28.99 NOTE --no-vignettes
r-release-osx-x86_64-mavericks 1.1-8 WARN
r-release-windows-ix86+x86_64 1.1-8 17.00 104.00 121.00 NOTE --no-vignettes
r-oldrel-windows-ix86+x86_64 1.1-8 16.00 93.00 109.00 NOTE --no-vignettes

Check Details

Version: 1.1-8
Flags: --no-vignettes
Check: R code for possible problems
Result: NOTE
    centerBase: no visible global function definition for ‘poly’
    fct: no visible global function definition for ‘contrasts<-’
    fct: no visible global function definition for ‘model.matrix’
    fct : makeNewX: no visible global function definition for ‘contrasts<-’
    fct : makeNewX: no visible global function definition for
     ‘model.matrix’
    irlba: no visible global function definition for ‘rnorm’
    iwls.start: no visible global function definition for ‘qlogis’
    iwls.start : iwls.step: no visible global function definition for
     ‘plogis’
    lin: no visible global function definition for ‘poly’
    lin : makeNewX: no visible global function definition for ‘poly’
    mrf: no visible global function definition for ‘contrasts<-’
    mrf: no visible global function definition for ‘contr.treatment’
    mrf: no visible global function definition for ‘model.matrix’
    plot.spikeSlabGAM : <anonymous>: no visible global function definition
     for ‘dev.interactive’
    plot.spikeSlabGAM : <anonymous>: no visible global function definition
     for ‘dev.new’
    plotTerm: no visible global function definition for ‘chull’
    predict.spikeSlabGAM: no visible binding for global variable ‘plogis’
    rnd: no visible global function definition for ‘contrasts<-’
    rnd: no visible global function definition for ‘contr.treatment’
    rnd: no visible global function definition for ‘model.matrix’
    rnd : makeNewX: no visible global function definition for
     ‘model.matrix’
    sm : makeNewX : <anonymous>: no visible global function definition for
     ‘splinefun’
    spikeAndSlab: no visible global function definition for ‘modifyList’
    spikeAndSlab: no visible global function definition for ‘model.matrix’
    spikeAndSlab: no visible binding for global variable ‘contr.treatment’
    spikeAndSlab: no visible global function definition for ‘runif’
    spikeAndSlab: no visible global function definition for ‘rbeta’
    spikeAndSlab: no visible global function definition for ‘rgamma’
    spikeAndSlab: no visible global function definition for ‘var’
    spikeAndSlab: no visible global function definition for ‘rnorm’
    spikeAndSlab: no visible global function definition for ‘quantile’
    spikeAndSlab : do1Chain: no visible global function definition for
     ‘rnorm’
    spikeAndSlab : do1Chain: no visible global function definition for
     ‘rbinom’
    spikeAndSlab : do1Chain: no visible global function definition for
     ‘plogis’
    spikeAndSlab : do1Chain: no visible global function definition for
     ‘rpois’
    spikeAndSlab: no visible global function definition for ‘plogis’
    spikeAndSlab: no visible global function definition for ‘dnorm’
    spikeAndSlab: no visible global function definition for ‘dbinom’
    spikeAndSlab: no visible global function definition for ‘dpois’
    srf: no visible global function definition for ‘chull’
    ssGAMDesign : replaceRawTerms: no visible global function definition
     for ‘terms.formula’
    ssGAMDesign : replaceRawTerms : replaceRawLabels: no visible global
     function definition for ‘is’
    ssGAMDesign : replaceRawTerms : rmNonsenseInteractions: no visible
     global function definition for ‘terms’
    ssGAMDesign: no visible global function definition for ‘terms.formula’
    ssGAMDesign : makeHierarchy: no visible global function definition for
     ‘terms’
    summarizeF: no visible binding for global variable ‘quantile’
    summary.spikeSlabGAM: no visible global function definition for
     ‘logLik’
    summary.spikeSlabGAM: no visible global function definition for ‘glm’
    tp2DBasis: no visible global function definition for ‘dist’
    u: no visible global function definition for ‘model.matrix’
    u : makeNewX: no visible global function definition for ‘model.matrix’
    Undefined global functions or variables:
     chull contr.treatment contrasts<- dbinom dev.interactive dev.new dist
     dnorm dpois glm is logLik model.matrix modifyList plogis poly qlogis
     quantile rbeta rbinom rgamma rnorm rpois runif splinefun terms
     terms.formula var
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 1.1-8
Flags: --no-vignettes
Check: line endings in Makefiles
Result: NOTE
    Found the following Makefile(s) without a final LF:
     src/Makevars
    Some ‘make’ programs ignore lines not ending in LF.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-8
Flags: --no-build-vignettes
Check: R code for possible problems
Result: NOTE
    centerBase: no visible global function definition for ‘poly’
    fct: no visible global function definition for ‘contrasts<-’
    fct: no visible global function definition for ‘model.matrix’
    fct : makeNewX: no visible global function definition for ‘contrasts<-’
    fct : makeNewX: no visible global function definition for
     ‘model.matrix’
    irlba: no visible global function definition for ‘rnorm’
    iwls.start: no visible global function definition for ‘qlogis’
    iwls.start : iwls.step: no visible global function definition for
     ‘plogis’
    lin: no visible global function definition for ‘poly’
    lin : makeNewX: no visible global function definition for ‘poly’
    mrf: no visible global function definition for ‘contrasts<-’
    mrf: no visible global function definition for ‘contr.treatment’
    mrf: no visible global function definition for ‘model.matrix’
    plot.spikeSlabGAM : <anonymous>: no visible global function definition
     for ‘dev.interactive’
    plot.spikeSlabGAM : <anonymous>: no visible global function definition
     for ‘dev.new’
    plotTerm: no visible global function definition for ‘chull’
    predict.spikeSlabGAM: no visible binding for global variable ‘plogis’
    rnd: no visible global function definition for ‘contrasts<-’
    rnd: no visible global function definition for ‘contr.treatment’
    rnd: no visible global function definition for ‘model.matrix’
    rnd : makeNewX: no visible global function definition for
     ‘model.matrix’
    sm : makeNewX : <anonymous>: no visible global function definition for
     ‘splinefun’
    spikeAndSlab: no visible global function definition for ‘modifyList’
    spikeAndSlab: no visible global function definition for ‘model.matrix’
    spikeAndSlab: no visible binding for global variable ‘contr.treatment’
    spikeAndSlab: no visible global function definition for ‘runif’
    spikeAndSlab: no visible global function definition for ‘rbeta’
    spikeAndSlab: no visible global function definition for ‘rgamma’
    spikeAndSlab: no visible global function definition for ‘var’
    spikeAndSlab: no visible global function definition for ‘rnorm’
    spikeAndSlab: no visible global function definition for ‘quantile’
    spikeAndSlab : do1Chain: no visible global function definition for
     ‘rnorm’
    spikeAndSlab : do1Chain: no visible global function definition for
     ‘rbinom’
    spikeAndSlab : do1Chain: no visible global function definition for
     ‘plogis’
    spikeAndSlab : do1Chain: no visible global function definition for
     ‘rpois’
    spikeAndSlab: no visible global function definition for ‘plogis’
    spikeAndSlab: no visible global function definition for ‘dnorm’
    spikeAndSlab: no visible global function definition for ‘dbinom’
    spikeAndSlab: no visible global function definition for ‘dpois’
    srf: no visible global function definition for ‘chull’
    ssGAMDesign : replaceRawTerms: no visible global function definition
     for ‘terms.formula’
    ssGAMDesign : replaceRawTerms : replaceRawLabels: no visible global
     function definition for ‘is’
    ssGAMDesign : replaceRawTerms : rmNonsenseInteractions: no visible
     global function definition for ‘terms’
    ssGAMDesign: no visible global function definition for ‘terms.formula’
    ssGAMDesign : makeHierarchy: no visible global function definition for
     ‘terms’
    summarizeF: no visible binding for global variable ‘quantile’
    summary.spikeSlabGAM: no visible global function definition for
     ‘logLik’
    summary.spikeSlabGAM: no visible global function definition for ‘glm’
    tp2DBasis: no visible global function definition for ‘dist’
    u: no visible global function definition for ‘model.matrix’
    u : makeNewX: no visible global function definition for ‘model.matrix’
    Undefined global functions or variables:
     chull contr.treatment contrasts<- dbinom dev.interactive dev.new dist
     dnorm dpois glm is logLik model.matrix modifyList plogis poly qlogis
     quantile rbeta rbinom rgamma rnorm rpois runif splinefun terms
     terms.formula var
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1-8
Flags: --no-build-vignettes
Check: line endings in Makefiles
Result: NOTE
    Found the following Makefile(s) without a final LF:
     src/Makevars
    Some ‘make’ programs ignore lines not ending in LF.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.1-8
Flags: --no-examples --no-vignettes
Check: line endings in Makefiles
Result: NOTE
    Found the following Makefile(s) without a final LF:
     src/Makevars
    Some ‘make’ programs ignore lines not ending in LF.
Flavor: r-patched-solaris-sparc

Version: 1.1-8
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘mboost’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1-8
Check: line endings in Makefiles
Result: NOTE
    Found the following Makefile(s) without a final LF:
     src/Makevars
    Some ‘make’ programs ignore lines not ending in LF.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1-8
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘UsingSpikeSlabGAM.Rnw’
     ...
    + "#FF7F00", "#FFFF33", "#A65628", "#F781BF", "#999999")
    
    > library("spikeSlabGAM")
    Loading required package: ggplot2
    
    > library("mboost")
    
     When sourcing 'UsingSpikeSlabGAM.R':
    Error: there is no package called 'mboost'
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1-8
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: ggplot2
    
    Error: processing vignette 'UsingSpikeSlabGAM.Rnw' failed with diagnostics:
     chunk 2 (label = loadLibs)
    Error in library("mboost") : there is no package called 'mboost'
    Execution halted
Flavor: r-release-osx-x86_64-mavericks