CRAN Package Check Results for Package spsurvey

Last updated on 2015-07-06 06:47:02.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.0 6.70 244.39 251.09 NOTE
r-devel-linux-x86_64-debian-gcc 3.0 8.55 262.17 270.72 NOTE
r-devel-linux-x86_64-fedora-clang 3.0 506.40 NOTE
r-devel-linux-x86_64-fedora-gcc 3.0 542.05 NOTE
r-devel-osx-x86_64-clang 3.0 380.56 OK
r-devel-windows-ix86+x86_64 3.0 52.00 370.00 422.00 NOTE
r-patched-linux-x86_64 3.0 8.26 264.63 272.89 OK
r-patched-solaris-sparc 3.0 2213.90 ERROR
r-patched-solaris-x86 3.0 986.90 OK
r-release-linux-x86_64 3.0 8.30 264.12 272.42 OK
r-release-osx-x86_64-mavericks 3.0 OK
r-release-windows-ix86+x86_64 3.0 50.00 372.00 422.00 OK
r-oldrel-windows-ix86+x86_64 3.0 57.00 437.00 494.00 OK

Memtest notes: valgrind

Check Details

Version: 3.0
Check: R code for possible problems
Result: NOTE
    attrisk.est: no visible global function definition for ‘qnorm’
    attrisk.est: no visible global function definition for ‘ftable’
    attrisk.est: no visible global function definition for ‘addmargins’
    attrisk.var: no visible global function definition for ‘var’
    category.est: no visible global function definition for ‘qnorm’
    catvar.prop: no visible binding for global variable ‘var’
    catvar.size: no visible binding for global variable ‘var’
    cdf.decon: no visible global function definition for ‘qnorm’
    cdf.est: no visible global function definition for ‘qnorm’
    cdf.plot: no visible global function definition for ‘par’
    cdf.plot: no visible global function definition for ‘lines’
    cdf.plot: no visible global function definition for ‘title’
    cdf.plot: no visible global function definition for ‘legend’
    cdf.plot: no visible global function definition for ‘axis’
    cdf.plot: no visible global function definition for ‘mtext’
    cdf.test: no visible global function definition for ‘pchisq’
    cdf.test: no visible global function definition for ‘pf’
    cdf.test: no visible global function definition for ‘var’
    cdfvar.prop: no visible binding for global variable ‘var’
    cdfvar.size.prop: no visible binding for global variable ‘var’
    cdfvar.size.total: no visible binding for global variable ‘var’
    cdfvar.test: no visible global function definition for ‘var’
    cdfvar.total: no visible binding for global variable ‘var’
    change.est: no visible global function definition for ‘qnorm’
    changevar.mean: no visible global function definition for ‘var’
    changevar.prop: no visible global function definition for ‘var’
    changevar.size: no visible global function definition for ‘var’
    cont.cdfplot: no visible global function definition for ‘pdf’
    cont.cdfplot: no visible global function definition for ‘par’
    cont.cdfplot: no visible global function definition for ‘graphics.off’
    dcdfvar.prop: no visible binding for global variable ‘var’
    dcdfvar.size.prop: no visible binding for global variable ‘var’
    dcdfvar.size.total: no visible binding for global variable ‘var’
    dcdfvar.total: no visible binding for global variable ‘var’
    dsgnsum: no visible global function definition for ‘addmargins’
    framesum: no visible global function definition for ‘addmargins’
    grtsarea: no visible global function definition for ‘runif’
    grtslin: no visible global function definition for ‘runif’
    grtspts: no visible global function definition for ‘runif’
    irsarea: no visible global function definition for ‘runif’
    irslin: no visible global function definition for ‘runif’
    localmean.weight: no visible global function definition for ‘dist’
    localmean.weight: no visible global function definition for ‘rnorm’
    localmean.weight2: no visible global function definition for ‘dist’
    plot.SpatialDesign: no visible global function definition for ‘pdf’
    plot.SpatialDesign: no visible global function definition for ‘points’
    plot.SpatialDesign: no visible global function definition for ‘rainbow’
    plot.SpatialDesign: no visible global function definition for ‘legend’
    plot.SpatialDesign: no visible global function definition for
     ‘graphics.off’
    relrisk.est: no visible global function definition for ‘qnorm’
    relrisk.est: no visible global function definition for ‘ftable’
    relrisk.est: no visible global function definition for ‘addmargins’
    relrisk.var: no visible global function definition for ‘var’
    simex: no visible global function definition for ‘pnorm’
    simex: no visible global function definition for ‘dnorm’
    spsurvey.analysis: no visible global function definition for
     ‘model.frame’
    total.est: no visible global function definition for ‘qnorm’
    total.var: no visible global function definition for ‘var’
    total.var: no visible binding for global variable ‘var’
    write.object: no visible global function definition for ‘text’
    write.object: no visible global function definition for ‘box’
    plot,SpatialDesign-missing: no visible global function definition for
     ‘pdf’
    plot,SpatialDesign-missing: no visible global function definition for
     ‘points’
    plot,SpatialDesign-missing: no visible global function definition for
     ‘rainbow’
    plot,SpatialDesign-missing: no visible global function definition for
     ‘legend’
    plot,SpatialDesign-missing: no visible global function definition for
     ‘graphics.off’
    Undefined global functions or variables:
     addmargins axis box dist dnorm ftable graphics.off legend lines
     model.frame mtext par pchisq pdf pf pnorm points qnorm rainbow rnorm
     runif text title var
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 3.0
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘Area_Design.Rnw’
     ...
     5: withVisible(eval(ei, envir))
     6: source(output, echo = TRUE)
     7: doTryCatch(return(expr), name, parentenv, handler)
     8: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     9: tryCatchList(expr, classes, parentenv, handlers)
    10: tryCatch({ source(output, echo = TRUE)}, error = function(e) { cat("\n When sourcing ", sQuote(output), ":\n", sep = "") stop(conditionMessage(e), call. = FALSE, domain = NA)})
    11: tools:::.run_one_vignette("Area_Design.Rnw", "/home/ripley/R/packages/tests32/spsurvey/vignettes", pkgdir = "/home/ripley/R/packages/tests32/spsurvey")
    aborting ...
    
    ... incomplete output. Crash?
    when running code in ‘Finite_Design.Rnw’
     ...
    Initial number of levels: 5
    Current number of levels: 5
    Error: Reading .shp file in grtspts.c
    Error: In C function cWtFcn.
    
     When sourcing ‘Finite_Design.R’:
    Error:
    An error occured while determining the number of levels for hierarchical
    randomization.
    Execution halted
    when running code in ‘Linear_Design.Rnw’
     ...
    Initial number of levels: 3
    Current number of levels: 3
    Error: reading shape file in C function lintFcn.
    Error: In C function lintFcn.
    
     When sourcing ‘Linear_Design.R’:
    Error:
    An error occured while determining the number of levels for hierarchical
    randomization.
    Execution halted
Flavor: r-patched-solaris-sparc

Version: 3.0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    address b2c00000, cause 'memory not mapped'
    
    Traceback:
     1: .Call("readDbfFile", filename)
     2: read.dbf("UT_ecoregions")
     3: eval(expr, envir, enclos)
     4: eval(expr, .GlobalEnv)
     5: withVisible(eval(expr, .GlobalEnv))
     6: doTryCatch(return(expr), name, parentenv, handler)
     7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     8: tryCatchList(expr, classes, parentenv, handlers)
     9: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
    10: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
    11: evalFunc(ce, options)
    12: tryCatchList(expr, classes, parentenv, handlers)
    13: tryCatch(evalFunc(ce, options), finally = { cat("\n") sink()})
    14: driver$runcode(drobj, chunk, chunkopts)
    15: utils::Sweave(...)
    16: engine$weave(file, quiet = quiet, encoding = enc)
    17: doTryCatch(return(expr), name, parentenv, handler)
    18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    19: tryCatchList(expr, classes, parentenv, handlers)
    20: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
    21: buildVignettes(dir = "/home/ripley/R/packages/tests32/spsurvey.Rcheck/vign_test/spsurvey")
    aborting ...
Flavor: r-patched-solaris-sparc