CRAN Package Check Results for Package survBayes

Last updated on 2014-04-19 09:52:29.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.2 0.86 16.39 17.25 NOTE
r-devel-linux-x86_64-debian-gcc 0.2.2 0.86 16.76 17.62 NOTE
r-devel-linux-x86_64-fedora-clang 0.2.2 35.34 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2.2 33.26 NOTE
r-devel-macosx-x86_64-clang 0.2.2 35.84 NOTE
r-devel-macosx-x86_64-gcc 0.2.2 NOTE
r-devel-windows-ix86+x86_64 0.2.2 3.00 29.00 32.00 NOTE
r-patched-linux-x86_64 0.2.2 0.98 17.61 18.59 NOTE
r-patched-solaris-sparc 0.2.2 190.60 NOTE
r-patched-solaris-x86 0.2.2 50.60 NOTE
r-release-linux-ix86 0.2.2 2.00 32.00 34.00 NOTE
r-release-linux-x86_64 0.2.2 0.86 16.44 17.30 NOTE
r-release-macosx-x86_64 0.2.2 NOTE
r-release-windows-ix86+x86_64 0.2.2 5.00 30.00 35.00 NOTE
r-oldrel-windows-ix86+x86_64 0.2.2 4.00 34.00 38.00 NOTE

Check Details

Version: 0.2.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘coda’ ‘survival’
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.2
Check: R code for possible problems
Result: NOTE
    survBayes: warning in match.call(expand = FALSE): partial argument
     match of 'expand' to 'expand.dots'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.2
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in ‘inst/doc’:
     ‘survBayes.Rnw’
    A ‘vignettes’ directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64

Version: 0.2.2
Check: Rd line widths
Result: NOTE
    Rd file 'survBayes.Rd':
     \usage lines wider than 90 characters:
     survBayes(formula = formula(data), data = parent.frame(), burn.in = 1000, number.sample = 1000, max.grid.size = 50, control, control.fr ... [TRUNCATED]
     \examples lines wider than 100 characters:
     control<-survBayes.control(delta.taylor = 0.3, sigma.lbh.1=0.01,rate.sigma.lbh.1 = 1e-3, shape.sigma.lbh.1 = 1e-3)
     AA.res<-survBayes(Surv(t.left,t.right,z*3,type="interval")~mo+lok+frailty(gr,dist="gamma"),data=AA.data,burn.in=0,number.sample=10,cont ... [TRUNCATED]
    
    Rd file 'survBayes.control.Rd':
     \usage lines wider than 90 characters:
     survBayes.control(n.inter = 100, delta.taylor = 0.1, sigma.lbh.0 = 100, sigma.lbh.1 = 100,
     rate.sigma.lbh.0 = 1e-04, rate.sigma.lbh.1 = 1e-04, shape.sigma.lbh.0 = 1e-04, shape.sigma.lbh.1 = 1e-04,
    
    Rd file 'survBayes.control.lognormal.frailty.Rd':
     \usage lines wider than 90 characters:
     survBayes.control.lognormal.frailty(sigma.RE = 100, rate.sigma.clust = 1e-04, shape.sigma.clust = 1e-04)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.2
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in 'inst/doc':
     'survBayes.Rnw'
    A 'vignettes' directory will be required as from R 3.1.0
Flavor: r-oldrel-windows-ix86+x86_64