CRAN Package Check Results for Package survJamda

Last updated on 2015-08-01 19:48:36.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.3 1.35 29.31 30.66 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.3 1.30 28.43 29.73 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.3 58.02 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.3 56.61 NOTE
r-devel-osx-x86_64-clang 1.1.3 53.71 OK
r-devel-windows-ix86+x86_64 1.1.3 6.00 46.00 52.00 NOTE
r-patched-linux-x86_64 1.1.3 1.57 29.55 31.12 OK
r-patched-solaris-sparc 1.1.3 389.70 OK
r-patched-solaris-x86 1.1.3 80.20 OK
r-release-linux-x86_64 1.1.3 1.40 28.83 30.23 OK
r-release-osx-x86_64-mavericks 1.1.3 OK
r-release-windows-ix86+x86_64 1.1.3 11.00 47.00 58.00 OK
r-oldrel-windows-ix86+x86_64 1.1.3 9.00 63.00 72.00 OK

Check Details

Version: 1.1.3
Check: R code for possible problems
Result: NOTE
    ComBat: no visible global function definition for ‘read.table’
    ComBat: no visible global function definition for ‘read.csv’
    ComBat: no visible binding for global variable ‘var’
    ComBat: no visible global function definition for ‘par’
    ComBat: no visible global function definition for ‘density’
    ComBat: no visible global function definition for ‘plot’
    ComBat: no visible global function definition for ‘lines’
    ComBat: no visible global function definition for ‘dnorm’
    ComBat: no visible global function definition for ‘qqnorm’
    ComBat: no visible global function definition for ‘qqline’
    ComBat: no visible global function definition for ‘rgamma’
    ComBat: no visible global function definition for ‘qqplot’
    ComBat: no visible global function definition for ‘title’
    ComBat: no visible global function definition for ‘write.table’
    L: no visible global function definition for ‘dnorm’
    aprior: no visible global function definition for ‘var’
    bprior: no visible global function definition for ‘var’
    calPerformance.merge.indep: no visible global function definition for
     ‘median’
    calPerformance.meta: no visible global function definition for ‘pnorm’
    calPerformance.meta: no visible global function definition for
     ‘p.adjust’
    calPerformance.meta: no visible global function definition for ‘median’
    calPerformance.single.indep: no visible global function definition for
     ‘median’
    ci.gm: no visible global function definition for ‘sd’
    combat.likelihood: no visible global function definition for ‘dnorm’
    cross.val.combat: no visible global function definition for ‘median’
    cross.val.combat: no visible global function definition for ‘lines’
    cross.val.surv: no visible global function definition for ‘median’
    cross.val.surv: no visible global function definition for ‘lines’
    eval.subset: no visible global function definition for ‘median’
    featureselection: no visible global function definition for ‘pchisq’
    featureselection: no visible global function definition for ‘p.adjust’
    generate.survival.data: no visible global function definition for
     ‘runif’
    generate.survival.data: no visible global function definition for
     ‘quantile’
    init.plot: no visible global function definition for ‘plot’
    init.plot: no visible global function definition for ‘abline’
    iter.crossval: no visible global function definition for ‘legend’
    iter.crossval: no visible global function definition for ‘sd’
    iter.crossval.combat: no visible global function definition for
     ‘legend’
    iter.crossval.combat: no visible global function definition for ‘sd’
    iter.subset: no visible global function definition for ‘sd’
    main.process: no visible global function definition for ‘abline’
    main.process: no visible global function definition for ‘legend’
    main.process: no visible global function definition for ‘title’
    plotROC: no visible global function definition for ‘plot’
    plotROC: no visible global function definition for ‘lines’
    pred.time.indep.valid: no visible global function definition for ‘par’
    writeGeno: no visible global function definition for ‘write.table’
    writeSamples: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline density dnorm legend lines median p.adjust par pchisq plot
     pnorm qqline qqnorm qqplot quantile read.csv read.table rgamma runif
     sd title var write.table
    Consider adding
     importFrom("graphics", "abline", "legend", "lines", "par", "plot",
     "title")
     importFrom("stats", "density", "dnorm", "median", "p.adjust", "pchisq",
     "pnorm", "qqline", "qqnorm", "qqplot", "quantile", "rgamma",
     "runif", "sd", "var")
     importFrom("utils", "read.csv", "read.table", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64