CRAN Package Check Results for Package survJamda

Last updated on 2015-07-07 11:48:30.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.3 1.34 28.86 30.19 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.3 1.32 28.24 29.56 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.3 57.53 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.3 56.28 NOTE
r-devel-osx-x86_64-clang 1.1.3 48.97 OK
r-devel-windows-ix86+x86_64 1.1.3 6.00 47.00 53.00 NOTE
r-patched-linux-x86_64 1.1.3 1.27 29.26 30.54 OK
r-patched-solaris-sparc 1.1.3 384.40 OK
r-patched-solaris-x86 1.1.3 80.90 OK
r-release-linux-x86_64 1.1.3 1.31 28.56 29.88 OK
r-release-osx-x86_64-mavericks 1.1.3 OK
r-release-windows-ix86+x86_64 1.1.3 11.00 47.00 58.00 OK
r-oldrel-windows-ix86+x86_64 1.1.3 9.00 63.00 72.00 OK

Check Details

Version: 1.1.3
Check: R code for possible problems
Result: NOTE
    ComBat: no visible global function definition for ‘read.table’
    ComBat: no visible global function definition for ‘read.csv’
    ComBat: no visible binding for global variable ‘var’
    ComBat: no visible global function definition for ‘par’
    ComBat: no visible global function definition for ‘density’
    ComBat: no visible global function definition for ‘plot’
    ComBat: no visible global function definition for ‘lines’
    ComBat: no visible global function definition for ‘dnorm’
    ComBat: no visible global function definition for ‘qqnorm’
    ComBat: no visible global function definition for ‘qqline’
    ComBat: no visible global function definition for ‘rgamma’
    ComBat: no visible global function definition for ‘qqplot’
    ComBat: no visible global function definition for ‘title’
    ComBat: no visible global function definition for ‘write.table’
    L: no visible global function definition for ‘dnorm’
    aprior: no visible global function definition for ‘var’
    bprior: no visible global function definition for ‘var’
    calPerformance.merge.indep: no visible global function definition for
     ‘median’
    calPerformance.meta: no visible global function definition for ‘pnorm’
    calPerformance.meta: no visible global function definition for
     ‘p.adjust’
    calPerformance.meta: no visible global function definition for ‘median’
    calPerformance.single.indep: no visible global function definition for
     ‘median’
    ci.gm: no visible global function definition for ‘sd’
    combat.likelihood: no visible global function definition for ‘dnorm’
    cross.val.combat: no visible global function definition for ‘median’
    cross.val.combat: no visible global function definition for ‘lines’
    cross.val.surv: no visible global function definition for ‘median’
    cross.val.surv: no visible global function definition for ‘lines’
    eval.subset: no visible global function definition for ‘median’
    featureselection: no visible global function definition for ‘pchisq’
    featureselection: no visible global function definition for ‘p.adjust’
    generate.survival.data: no visible global function definition for
     ‘runif’
    generate.survival.data: no visible global function definition for
     ‘quantile’
    init.plot: no visible global function definition for ‘plot’
    init.plot: no visible global function definition for ‘abline’
    iter.crossval: no visible global function definition for ‘legend’
    iter.crossval: no visible global function definition for ‘sd’
    iter.crossval.combat: no visible global function definition for
     ‘legend’
    iter.crossval.combat: no visible global function definition for ‘sd’
    iter.subset: no visible global function definition for ‘sd’
    main.process: no visible global function definition for ‘abline’
    main.process: no visible global function definition for ‘legend’
    main.process: no visible global function definition for ‘title’
    plotROC: no visible global function definition for ‘plot’
    plotROC: no visible global function definition for ‘lines’
    pred.time.indep.valid: no visible global function definition for ‘par’
    writeGeno: no visible global function definition for ‘write.table’
    writeSamples: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline density dnorm legend lines median p.adjust par pchisq plot
     pnorm qqline qqnorm qqplot quantile read.csv read.table rgamma runif
     sd title var write.table
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64