CRAN Package Check Results for Package survJamda

Last updated on 2014-08-02 01:50:10.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.2 1.66 32.36 34.02 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.2 1.62 32.06 33.67 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.2 68.34 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.2 65.81 NOTE
r-devel-osx-x86_64-clang 1.1.2 61.07 NOTE
r-devel-windows-ix86+x86_64 1.1.2 7.00 49.00 56.00 NOTE
r-patched-linux-x86_64 1.1.2 1.61 31.81 33.42 NOTE
r-patched-solaris-sparc 1.1.2 387.20 NOTE
r-patched-solaris-x86 1.1.2 91.60 NOTE
r-release-linux-ix86 1.1.2 2.20 43.28 45.48 NOTE
r-release-linux-x86_64 1.1.2 1.66 32.92 34.58 NOTE
r-release-osx-x86_64-mavericks 1.1.2 NOTE
r-release-osx-x86_64-snowleopard 1.1.2 NOTE
r-release-windows-ix86+x86_64 1.1.2 7.00 71.00 78.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1.2 7.00 56.00 63.00 NOTE

Check Details

Version: 1.1.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ecodist survival survivalROC
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.2
Check: R code for possible problems
Result: NOTE
    det.batchID: no visible binding for global variable geno.files
    det.set.ind: no visible binding for global variable geno.files
    eval.subset: no visible binding for global variable lst
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.2
Check: installed files from inst/doc
Result: NOTE
    The following files look like leftovers/mistakes:
     survJamda.dvi
    Please remove them from your package.
    The following files should probably not be installed:
     survJamda.tex
    
    Consider the use of a .Rinstignore file: see Writing R Extensions ,
    or move the vignette sources from inst/doc to vignettes .
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.2
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in inst/doc :
     survJamda.Rnw
    A vignettes directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.1.2
Check: Rd line widths
Result: NOTE
    Rd file 'iter.crossval.Rd':
     \examples lines wider than 100 characters:
     function (data, surv, censor,ngroup=10, plot.roc = 0, method = "none", zscore=0,gn.nb = 100,gn.nb.display = 0){
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1.2
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in 'inst/doc':
     'survJamda.Rnw'
    A 'vignettes' directory will be required as from R 3.1.0
Flavor: r-oldrel-windows-ix86+x86_64