CRAN Package Check Results for Package survJamda

Last updated on 2014-04-20 17:47:06.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.2 1.76 33.14 34.90 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.2 1.84 33.17 35.02 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.2 69.71 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.2 68.81 NOTE
r-devel-macosx-x86_64-clang 1.1.2 65.80 NOTE
r-devel-macosx-x86_64-gcc 1.1.2 ERROR
r-devel-windows-ix86+x86_64 1.1.2 8.00 50.00 58.00 NOTE
r-patched-linux-x86_64 1.1.2 1.77 33.12 34.89 NOTE
r-patched-solaris-sparc 1.1.2 374.60 NOTE
r-patched-solaris-x86 1.1.2 88.30 NOTE
r-release-linux-ix86 NOTE
r-release-linux-x86_64 1.1.2 1.75 32.53 34.28 NOTE
r-release-macosx-x86_64 1.1.2 ERROR
r-release-windows-ix86+x86_64 1.1.2 11.00 55.00 66.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1.2 7.00 56.00 63.00 NOTE

Check Details

Version: 1.1.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘ecodist’ ‘survival’ ‘survivalROC’
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.2
Check: R code for possible problems
Result: NOTE
    det.batchID: no visible binding for global variable ‘geno.files’
    det.set.ind: no visible binding for global variable ‘geno.files’
    eval.subset: no visible binding for global variable ‘lst’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.2
Check: installed files from ‘inst/doc’
Result: NOTE
    The following files look like leftovers/mistakes:
     ‘survJamda.dvi’
    Please remove them from your package.
    The following files should probably not be installed:
     ‘survJamda.tex’
    
    Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
    or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.2
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in ‘inst/doc’:
     ‘survJamda.Rnw’
    A ‘vignettes’ directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.1.2
Check: Rd line widths
Result: NOTE
    Rd file 'iter.crossval.Rd':
     \examples lines wider than 100 characters:
     function (data, surv, censor,ngroup=10, plot.roc = 0, method = "none", zscore=0,gn.nb = 100,gn.nb.display = 0){
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1.2
Check: package dependencies
Result: ERROR
    Package required but not available: ‘survcomp’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-macosx-x86_64-gcc, r-release-macosx-x86_64

Version: 1.1.2
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in 'inst/doc':
     'survJamda.Rnw'
    A 'vignettes' directory will be required as from R 3.1.0
Flavor: r-oldrel-windows-ix86+x86_64