CRAN Package Check Results for Package surveillance

Last updated on 2017-08-16 16:47:07.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.14.0 24.43 320.95 345.38 NOTE
r-devel-linux-x86_64-debian-gcc 1.14.0 23.33 304.36 327.70 NOTE
r-devel-linux-x86_64-fedora-clang 1.14.0 669.26 NOTE
r-devel-linux-x86_64-fedora-gcc 1.14.0 649.52 NOTE
r-devel-windows-ix86+x86_64 1.14.0 68.00 715.00 783.00 NOTE --no-vignettes
r-patched-linux-x86_64 1.14.0 24.32 319.15 343.46 NOTE
r-patched-solaris-x86 1.14.0 789.90 ERROR
r-release-linux-x86_64 1.14.0 23.00 318.26 341.26 NOTE
r-release-windows-ix86+x86_64 1.14.0 77.00 689.00 766.00 NOTE --no-vignettes
r-release-osx-x86_64 1.14.0 NOTE
r-oldrel-windows-ix86+x86_64 1.14.0 70.00 487.00 557.00 NOTE --no-vignettes
r-oldrel-osx-x86_64 1.14.0 NOTE

Check Details

Version: 1.14.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘INLA’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.14.0
Check: installed package size
Result: NOTE
     installed size is 7.1Mb
     sub-directories of 1Mb or more:
     doc 2.3Mb
     libs 1.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.14.0
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 7.2Mb
     sub-directories of 1Mb or more:
     doc 2.3Mb
     libs 1.7Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.14.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [64s/65s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > if (require("testthat")) {
     + test_check("surveillance")
     + }
     Loading required package: testthat
     Loading required package: surveillance
     Loading required package: sp
     Loading required package: xtable
     Loading required package: polyCub
     This is surveillance 1.14.0. For overview type 'help(surveillance)'.
    
     Penalized log-likelihood:
     Checking analytical score vector using numDeriv::grad() ...
     [1] TRUE
     Checking analytical Fisher information matrix using numDeriv::hessian() ...
     [1] "Mean relative difference: 3.802109e-07"
    
     Penalized log-likelihood:
     Checking analytical score vector using numDeriv::grad() ...
     [1] TRUE
     Checking analytical Fisher information matrix using numDeriv::hessian() ...
     [1] "Mean relative difference: 1.551014e-07"
     'F' vs. cubature using method = "midpoint" ... TRUE
     'Fcircle' vs. cubature using method = "midpoint" ... TRUE
     'deriv' vs. numerical derivative ... TRUE
     'Deriv' vs. cubature using method = "midpoint" ... TRUE
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     'F' vs. cubature using method = "SV" ... TRUE
     'Fcircle' vs. cubature using method = "SV" ... TRUE
     'deriv' vs. numerical derivative ... TRUE
     'Deriv' vs. cubature using method = "SV" ...
     siaf parameter 1: TRUE
     siaf parameter 2: TRUE
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     'F' vs. cubature using method = "midpoint" ... TRUE
     'Fcircle' vs. cubature using method = "midpoint" ... TRUE
     'deriv' vs. numerical derivative ... TRUE
     'Deriv' vs. cubature using method = "midpoint" ...
     siaf parameter 1: TRUE
     siaf parameter 2: TRUE
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     Checking 'intrfr' against a numeric approximation ... OK
     'F' vs. cubature using method = "SV" ... TRUE
     'deriv' vs. numerical derivative ... TRUE
     'Deriv' vs. cubature using method = "SV" ...
     siaf parameter 1: TRUE
     siaf parameter 2: TRUE
     'F' vs. cubature using method = "midpoint" ... TRUE
     'Fcircle' vs. cubature using method = "midpoint" ... TRUE
     'deriv' vs. numerical derivative ... TRUE
     'Deriv' vs. cubature using method = "midpoint" ...
     siaf parameter 1: TRUE
     siaf parameter 2: TRUE
     siaf parameter 3: TRUE
     1. Error: siaf.powerlaw() engines agree (@test-siafs.R#102) --------------------
     abnormal termination of integration routine (1)
     1: expect_equal_CnR(siafgen = siaf.powerlaw, pargrid = cbind(0.5, log(c(0.1, 1, 2)))) at testthat/test-siafs.R:102
     2: apply(pargrid, 1, function(pars) c(C = siafC$F(polydomain, , pars), R = siafR$F(polydomain,
     , pars))) at testthat/test-siafs.R:87
     3: FUN(newX[, i], ...)
     4: siafC$F(polydomain, , pars) at testthat/test-siafs.R:87
     5: siaf_polyCub_iso(polydomain$bdry, "intrfr.powerlaw", siafpars, list(...))
     6: lapply(X = polys, FUN = siaf_polyCub1_iso, intrfr_code = INTRFR_CODE[intrfr_name],
     pars = pars, subdivisions = control$subdivisions, rel.tol = control$rel.tol,
     abs.tol = control$abs.tol, stop.on.error = control$stop.on.error)
     7: FUN(X[[i]], ...)
    
     2. Error: siaf.powerlawL() engines agree (@test-siafs.R#112) -------------------
     abnormal termination of integration routine (1)
     1: expect_equal_CnR(siafgen = siaf.powerlawL, pargrid = cbind(-0.5, log(c(0.1, 1, 2)))) at testthat/test-siafs.R:112
     2: apply(pargrid, 1, function(pars) c(siafC$Deriv(polydomain, , pars), siafR$Deriv(polydomain,
     , pars))) at testthat/test-siafs.R:93
     3: FUN(newX[, i], ...)
     4: siafC$Deriv(polydomain, , pars) at testthat/test-siafs.R:93
     5: siaf_polyCub_iso(polydomain$bdry, "intrfr.powerlawL.dlogd", siafpars, list(...))
     6: lapply(X = polys, FUN = siaf_polyCub1_iso, intrfr_code = INTRFR_CODE[intrfr_name],
     pars = pars, subdivisions = control$subdivisions, rel.tol = control$rel.tol,
     abs.tol = control$abs.tol, stop.on.error = control$stop.on.error)
     7: FUN(X[[i]], ...)
    
     testthat results ================================================================
     OK: 241 SKIPPED: 0 FAILED: 2
     1. Error: siaf.powerlaw() engines agree (@test-siafs.R#102)
     2. Error: siaf.powerlawL() engines agree (@test-siafs.R#112)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.14.0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Type gamlssNews() to see new features/changes/bug fixes.
    
    Doing computations: FALSE
    Warning: running command 'kpsewhich framed.sty' had status 1
    Warning in test_latex_pkg("framed", system.file("misc", "framed.sty", package = "knitr")) :
     unable to find LaTeX package 'framed'; will use a copy from knitr
    Doing computations: FALSE
    Loading required namespace: spdep
    Note: range of maximum neighbour order by region is 3-5
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'hhh4_spacetime.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `bbm.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.53 ^^M
    
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64