CRAN Package Check Results for Package survey

Last updated on 2014-04-19 09:52:29.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.29-5 2.03 108.80 110.83 NOTE
r-devel-linux-x86_64-debian-gcc 3.29-5 2.29 111.47 113.76 NOTE
r-devel-linux-x86_64-fedora-clang 3.29-5 238.39 NOTE
r-devel-linux-x86_64-fedora-gcc 3.29-5 234.91 NOTE
r-devel-macosx-x86_64-clang 3.29-5 180.97 NOTE
r-devel-macosx-x86_64-gcc 3.29-5 ERROR
r-devel-windows-ix86+x86_64 3.29-5 5.00 221.00 226.00 NOTE
r-patched-linux-x86_64 3.29-5 2.09 110.26 112.35 NOTE
r-patched-solaris-sparc 3.29-5 1269.80 NOTE
r-patched-solaris-x86 3.29-5 276.90 NOTE
r-release-linux-ix86 3.29-5 4.00 167.00 171.00 NOTE
r-release-linux-x86_64 3.29-5 2.05 108.96 111.02 NOTE
r-release-windows-ix86+x86_64 3.29-5 7.00 147.00 154.00 NOTE
r-oldrel-windows-ix86+x86_64 3.29-5 6.00 183.00 189.00 NOTE

Check Details

Version: 3.29-5
Check: dependencies in R code
Result: NOTE
    ':::' calls which should be '::':
     ‘survival:::agexact.fit’ ‘survival:::agreg.fit’
     See the note in ?`:::` about the use of this operator.
    Unexported objects imported by ':::' calls:
     ‘RODBC:::odbcValidChannel’ ‘parallel:::closeAll’
     ‘survival:::predict.coxph’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 3.29-5
Check: R code for possible problems
Result: NOTE
    svyplot.default: no visible global function definition for ‘hcell’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.29-5
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in ‘inst/doc’:
     ‘domain.Rnw’, ‘epi.Rnw’, ‘phase1.Rnw’, ‘pps.Rnw’, ‘survey.Rnw’
    A ‘vignettes’ directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 3.29-5
Check: Rd line widths
Result: NOTE
    Rd file 'anova.svyglm.Rd':
     \usage lines wider than 90 characters:
     anova(object, object2 = NULL, test = c("F", "Chisq"), method = c("LRT", "Wald"), tolerance = 1e-05, ..., force = FALSE)
     \examples lines wider than 100 characters:
     model1<-svyglm(I(sch.wide=="Yes")~ell+meals+mobility+as.numeric(stype), design=dclus2, family=quasibinomial())
    
    Rd file 'as.svrepdesign.Rd':
     \usage lines wider than 90 characters:
     as.svrepdesign(design, type=c("auto", "JK1", "JKn", "BRR", "bootstrap","subbootstrap","mrbbootstrap","Fay"),
     fay.rho = 0, fpc=NULL,fpctype=NULL,..., compress=TRUE, mse=getOption("survey.replicates.mse"))
    
    Rd file 'barplot.svystat.Rd':
     \examples lines wider than 100 characters:
     barplot(a, names.arg=c("Elementary","High","Middle"), col="purple", main="Proportions of school level")
    
    Rd file 'calibrate.Rd':
     \examples lines wider than 100 characters:
     dclus1tr <- calibrate(dclus1, ~stype+api99, c(pop.totals, api99=3914069),bounds=c(0.5,2), trim=c(2/3,3/2))
     rclus1tr <- calibrate(rclus1, ~stype+api99, c(pop.totals, api99=3914069),bounds=c(0.5,2), trim=c(2/3,3/2))
     gclus1r<-calibrate(dclus1, formula=list(~stype+sch.wide, ~stype+comp.imp), population=list(pop.table, pop.table2),calfun="raking")
    
    Rd file 'fpc.Rd':
     \examples lines wider than 100 characters:
     withoutfpc<-svydesign(weights=~weight, ids=~psuid, strata=~stratid, variables=~x, data=fpc, nest=TRUE)
    
    Rd file 'pchisqsum.Rd':
     \usage lines wider than 90 characters:
     pchisqsum(x, df, a, lower.tail = TRUE, method = c("satterthwaite", "integration","saddlepoint"))
     pFsum(x, df, a, ddf=Inf,lower.tail = TRUE, method = c("saddlepoint","integration","satterthwaite"), ...)
    
    Rd file 'svrVar.Rd':
     \usage lines wider than 90 characters:
     svrVar(thetas, scale, rscales, na.action=getOption("na.action"), mse=getOption("survey.replicates.mse"),coef)
    
    Rd file 'svrepdesign.Rd':
     \usage lines wider than 90 characters:
     scale=NULL, rscales=NULL,fpc=NULL, fpctype=c("fraction","correction"),mse=getOption("survey.replicates.mse"),...)
     svrepdesign(variables=NULL, repweights,weights,data,mse=getOption("survey.replicates.mse"),...)
    
    Rd file 'svyby.Rd':
     \examples lines wider than 100 characters:
     (a<-svyby(~enroll, ~stype, rclus1, svytotal, deff=TRUE, verbose=TRUE, vartype=c("se","cv","cvpct","var")))
    
    Rd file 'svychisq.Rd':
     \usage lines wider than 90 characters:
     svychisq(formula, design, statistic = c("F", "Chisq","Wald","adjWald","lincom","saddlepoint"),na.rm=TRUE,...)
     svychisq(formula, design, statistic = c("F", "Chisq","Wald","adjWald","lincom","saddlepoint"),na.rm=TRUE,...)
    
    Rd file 'svycontrast.Rd':
     \examples lines wider than 100 characters:
     svycontrast(moments, quote((`I(api00^3)`-3*`I(api00^2)`*`I(api00)`+3*`I(api00)`*`I(api00)`^2-`I(api00)`^3)/(`I(api00^2)`-`I(api00)`^2)^ ... [TRUNCATED]
    
    Rd file 'svydesign.Rd':
     \usage lines wider than 90 characters:
     data = NULL, nest = FALSE, check.strata = !nest, weights=NULL,pps=FALSE,variance=c("HT","YG"),...)
    
    Rd file 'svyfactanal.Rd':
     \usage lines wider than 90 characters:
     svyfactanal(formula, design, factors, n = c("none", "sample", "degf","effective", "min.effective"), ...)
    
    Rd file 'svymle.Rd':
     \examples lines wider than 100 characters:
     m1 <- svymle(loglike=dnorm,gradient=NULL, design=dstrat, formulas=list(mean=api00~api99+ell, sd=~1),start=list(c(80,1,0),c(20)), log=T ... [TRUNCATED]
    
    Rd file 'svyplot.Rd':
     \examples lines wider than 100 characters:
     grid.polyline(s$api99$x,s$api99$y,vp=h$plot.vp@hexVp.on,default.units="native", gp=gpar(col="red",lwd=2))
    
    Rd file 'svyprcomp.Rd':
     \usage lines wider than 90 characters:
     max.alpha=0.5,max.cex=0.5,xlim=NULL,ylim=NULL,pc.biplot=FALSE,expand=1,xlab=NULL,ylab=NULL,
    
    Rd file 'svystandardize.Rd':
     \examples lines wider than 100 characters:
     stdes<-svystandardize(design, by=~agecat, over=~race+RIAGENDR, population=popage, excluding.missing=~HI_CHOL)
    
    Rd file 'withReplicates.Rd':
     \usage lines wider than 90 characters:
     withReplicates(design, theta, rho = NULL, ..., scale.weights=FALSE, return.replicates=FALSE)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 3.29-5
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘quantreg’
    
    Package which this enhances but not available for checking: ‘odfWeave.survey’
Flavor: r-devel-macosx-x86_64-gcc

Version: 3.29-5
Check: R code for possible problems
Result: NOTE
    svyplot.default: no visible global function definition for ‘hcell’
    svyrqss: no visible global function definition for ‘rq’
Flavor: r-devel-macosx-x86_64-gcc

Version: 3.29-5
Check: examples
Result: ERROR
    Running examples in ‘survey-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: svysmooth
    > ### Title: Scatterplot smoothing and density estimation
    > ### Aliases: svysmooth svysmooth.default plot.svysmooth print.svysmooth
    > ### lines.svysmooth make.panel.svysmooth
    > ### Keywords: hplot survey
    >
    > ### ** Examples
    >
    > data(api)
    > dstrat<-svydesign(id=~1,strata=~stype, weights=~pw, data=apistrat, fpc=~fpc)
    >
    > smth<-svysmooth(api00~api99+ell,dstrat)
    Loading required package: KernSmooth
    > dens<-svysmooth(~api99, dstrat,bandwidth=30)
    > dens1<-svysmooth(~api99, dstrat)
    > qsmth<-svysmooth(api00~ell,dstrat, quantile=0.75, df=3,method="quantreg")
    Loading required package: quantreg
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘quantreg’
    Error in svyrqss(formula, design, quantile = quantile, df = df, ...) :
     needs quantreg package
    Calls: svysmooth -> svysmooth.default -> svyrqss
    Execution halted
Flavor: r-devel-macosx-x86_64-gcc

Version: 3.29-5
Check: dependencies in R code
Result: NOTE
    ':::' calls which should be '::':
     'survival:::agexact.fit' 'survival:::agreg.fit'
     See the note in ?`:::` about the use of this operator.
    Missing object imported by a ':::' call: 'parallel:::closeAll'
    Unexported objects imported by ':::' calls:
     'RODBC:::odbcValidChannel' 'survival:::predict.coxph'
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.29-5
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in 'inst/doc':
     'domain.Rnw', 'epi.Rnw', 'phase1.Rnw', 'pps.Rnw', 'survey.Rnw'
    A 'vignettes' directory will be required as from R 3.1.0
Flavor: r-oldrel-windows-ix86+x86_64