CRAN Package Check Results for Package survrec

Last updated on 2016-09-29 20:47:34.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2-2 1.95 12.11 14.06 WARN
r-devel-linux-x86_64-debian-gcc 1.2-2 2.24 13.41 15.65 WARN
r-devel-linux-x86_64-fedora-clang 1.2-2 24.95 WARN
r-devel-linux-x86_64-fedora-gcc 1.2-2 22.69 WARN
r-devel-macos-x86_64-clang 1.2-2 21.04 WARN
r-devel-windows-ix86+x86_64 1.2-2 9.00 44.00 53.00 ERROR
r-patched-linux-x86_64 1.2-2 2.00 12.16 14.15 NOTE
r-patched-solaris-sparc 1.2-2 155.30 NOTE
r-patched-solaris-x86 1.2-2 34.50 NOTE
r-release-linux-x86_64 1.2-2 2.00 11.97 13.97 NOTE
r-release-osx-x86_64-mavericks 1.2-2 NOTE
r-release-windows-ix86+x86_64 1.2-2 9.00 50.00 59.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2-2 15.00 33.00 48.00 OK

Check Details

Version: 1.2-2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: GNU Extension: Nonstandard type declaration REAL*8 at (1)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.2-2
Check: R code for possible problems
Result: NOTE
    lines.survfitr: no visible global function definition for ‘lines’
    plot.survfitr: no visible global function definition for ‘plot’
    plot.survfitr: no visible global function definition for ‘lines’
    plot.survfitr: no visible global function definition for ‘qnorm’
    print.survfitr : pfun: no visible global function definition for
     ‘median’
    survdiffr: no visible global function definition for ‘runif’
    survdiffr: no visible global function definition for ‘terms’
    survdiffr: no visible global function definition for ‘model.extract’
    survfitr: no visible global function definition for ‘terms’
    survfitr: no visible global function definition for ‘model.extract’
    Undefined global functions or variables:
     lines median model.extract plot qnorm runif terms
    Consider adding
     importFrom("graphics", "lines", "plot")
     importFrom("stats", "median", "model.extract", "qnorm", "runif",
     "terms")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.2-2
Check: compiled code
Result: NOTE
    File ‘survrec/libs/survrec.so’:
     Found ‘_gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘bootstrap.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2-2
Check: compiled code
Result: NOTE
    File ‘survrec/libs/survrec.so’:
     Found ‘__gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘bootstrap.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-macos-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 1.2-2
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'survrec-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: survdiffr
    > ### Title: Test median survival differences (or other quantile)
    > ### Aliases: survdiffr
    > ### Keywords: survival
    >
    > ### ** Examples
    >
    >
    > data(colon)
    >
    > #We will compare the median survival time for three dukes stages
    > fit<-survdiffr(Survr(hc,time,event)~as.factor(dukes),data=colon,q=0.5)
    At line 410 of file bootstrap.f
    Fortran runtime error: Index '801' of dimension 1 of array 'timesboot' above upper bound of 800
Flavor: r-devel-windows-ix86+x86_64

Version: 1.2-2
Check: compiled code
Result: NOTE
    File ‘survrec/libs/survrec.so’:
     Found ‘rand_’, possibly from ‘rand’ (Fortran)
     Object: ‘bootstrap.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86