CRAN Package Check Results for Package swamp

Last updated on 2015-06-30 09:47:15.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.3 0.74 24.17 24.91 NOTE
r-devel-linux-x86_64-debian-gcc 1.2.3 0.73 23.32 24.05 NOTE
r-devel-linux-x86_64-fedora-clang 1.2.3 44.77 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.3 42.25 NOTE
r-devel-osx-x86_64-clang 1.2.3 38.12 NOTE
r-devel-windows-ix86+x86_64 1.2.3 6.00 34.00 40.00 NOTE
r-patched-linux-x86_64 1.2.3 0.75 22.55 23.30 NOTE
r-patched-solaris-sparc 1.2.3 279.00 NOTE
r-patched-solaris-x86 1.2.3 61.50 NOTE
r-release-linux-x86_64 1.2.3 0.76 22.78 23.54 NOTE
r-release-osx-x86_64-mavericks 1.2.3 NOTE
r-release-windows-ix86+x86_64 1.2.3 4.00 42.00 46.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2.3 5.00 70.00 75.00 NOTE

Check Details

Version: 1.2.3
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.2.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘MASS’ ‘amap’ ‘gplots’ ‘impute’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘MASS’ ‘amap’ ‘gplots’ ‘impute’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2.3
Check: R code for possible problems
Result: NOTE
    adjust.linearmodel: no visible global function definition for ‘lm’
    adjust.linearmodel: no visible global function definition for ‘rlm’
    combat : aprior: no visible global function definition for ‘var’
    combat : bprior: no visible global function definition for ‘var’
    combat : L: no visible global function definition for ‘dnorm’
    combat: no visible binding for global variable ‘var’
    combat: no visible global function definition for ‘par’
    combat: no visible global function definition for ‘density’
    combat: no visible global function definition for ‘plot’
    combat: no visible global function definition for ‘lines’
    combat: no visible global function definition for ‘dnorm’
    combat: no visible global function definition for ‘qqnorm’
    combat: no visible global function definition for ‘qqline’
    combat: no visible global function definition for ‘rgamma’
    combat: no visible global function definition for ‘qqplot’
    combat: no visible global function definition for ‘title’
    confounding: no visible global function definition for ‘heat.colors’
    confounding: no visible global function definition for ‘fisher.test’
    confounding: no visible global function definition for ‘chisq.test’
    confounding: no visible global function definition for ‘lm’
    confounding: no visible global function definition for ‘pf’
    confounding: no visible global function definition for ‘heatmap.2’
    corrected.p: no visible global function definition for ‘p.adjust’
    dense.plot: no visible global function definition for ‘density’
    dense.plot: no visible global function definition for ‘plot’
    dense.plot: no visible global function definition for ‘lines’
    feature.assoc: no visible binding for global variable ‘cor’
    feature.assoc : <anonymous>: no visible global function definition for
     ‘cor.test’
    feature.assoc: no visible global function definition for ‘t.test’
    feature.assoc: no visible global function definition for ‘wilcox.test’
    feature.assoc: no visible global function definition for ‘na.omit’
    feature.assoc: no visible global function definition for ‘lm’
    feature.assoc: no visible global function definition for ‘pf’
    hca.plot: no visible global function definition for ‘palette’
    hca.plot: no visible global function definition for ‘colorpanel’
    hca.plot: no visible global function definition for ‘hcluster’
    hca.plot: no visible global function definition for ‘as.dendrogram’
    hca.plot: no visible global function definition for ‘par’
    hca.plot: no visible global function definition for ‘layout’
    hca.plot: no visible global function definition for ‘plot’
    hca.plot: no visible global function definition for ‘rect’
    hca.plot: no visible global function definition for ‘axis’
    hca.test: no visible global function definition for ‘hcluster’
    hca.test: no visible global function definition for ‘cutree’
    hca.test: no visible global function definition for ‘fisher.test’
    hca.test: no visible global function definition for ‘chisq.test’
    hca.test: no visible global function definition for ‘lm’
    hca.test: no visible global function definition for ‘pf’
    kill.pc: no visible global function definition for ‘impute.knn’
    prince: no visible global function definition for ‘impute.knn’
    prince: no visible global function definition for ‘prcomp’
    prince: no visible global function definition for ‘lm’
    prince: no visible global function definition for ‘pf’
    prince.plot: no visible global function definition for ‘heat.colors’
    prince.plot: no visible global function definition for ‘heatmap.2’
    prince.var.plot: no visible global function definition for ‘impute.knn’
    prince.var.plot: no visible global function definition for ‘prcomp’
    prince.var.plot: no visible binding for global variable ‘median’
    prince.var.plot: no visible global function definition for ‘plot’
    prince.var.plot: no visible global function definition for ‘points’
    prince.var.plot: no visible global function definition for ‘legend’
    quickadjust.ref: no visible binding for global variable ‘median’
    quickadjust.ref: no visible global function definition for ‘median’
    quickadjust.zero: no visible binding for global variable ‘median’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 1.2.3
Check: Rd line widths
Result: NOTE
    Rd file 'prince.plot.Rd':
     \examples lines wider than 100 characters:
     ## patient annotations as a data.frame, annotations should be numbers and factors but not characters.
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2.3
Check: R code for possible problems
Result: NOTE
    adjust.linearmodel: no visible global function definition for ‘rlm’
    confounding: no visible global function definition for ‘heatmap.2’
    hca.plot: no visible global function definition for ‘colorpanel’
    hca.plot: no visible global function definition for ‘hcluster’
    hca.test: no visible global function definition for ‘hcluster’
    kill.pc: no visible global function definition for ‘impute.knn’
    prince: no visible global function definition for ‘impute.knn’
    prince.plot: no visible global function definition for ‘heatmap.2’
    prince.var.plot: no visible global function definition for ‘impute.knn’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64