CRAN Package Check Results for Package sybilDynFBA

Last updated on 2015-09-04 23:56:30.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.2 2.85 35.37 38.22 NOTE
r-devel-linux-x86_64-debian-gcc 0.0.2 2.78 34.71 37.49 NOTE
r-devel-linux-x86_64-fedora-clang 0.0.2 85.76 NOTE
r-devel-linux-x86_64-fedora-gcc 0.0.2 78.06 NOTE
r-devel-osx-x86_64-clang 0.0.2 61.06 NOTE
r-devel-windows-ix86+x86_64 0.0.2 8.00 84.00 92.00 NOTE
r-patched-linux-x86_64 0.0.2 3.31 37.34 40.65 NOTE
r-patched-solaris-sparc 0.0.2 512.70 NOTE
r-patched-solaris-x86 0.0.2 124.90 NOTE
r-release-linux-x86_64 0.0.2 3.28 37.57 40.84 NOTE
r-release-osx-x86_64-mavericks 0.0.2 NOTE
r-release-windows-ix86+x86_64 0.0.2 12.00 66.00 78.00 NOTE
r-oldrel-windows-ix86+x86_64 0.0.2 11.00 80.00 91.00 NOTE

Check Details

Version: 0.0.2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.2
Check: R code for possible problems
Result: NOTE
    dynamicFBA: no visible global function definition for ‘is’
    optsol_dynamicFBA: no visible global function definition for ‘new’
    plot,optsol_dynamicFBA-missing: no visible global function definition
     for ‘par’
    plot,optsol_dynamicFBA-missing: no visible global function definition
     for ‘layout’
    plot,optsol_dynamicFBA-missing: no visible global function definition
     for ‘spline’
    plot,optsol_dynamicFBA-missing: no visible global function definition
     for ‘points’
    plot,optsol_dynamicFBA-missing: no visible global function definition
     for ‘lines’
    plot,optsol_dynamicFBA-missing: no visible global function definition
     for ‘legend’
    Undefined global functions or variables:
     is layout legend lines new par points spline
    Consider adding
     importFrom("graphics", "layout", "legend", "lines", "par", "points")
     importFrom("methods", "is", "new")
     importFrom("stats", "spline")
    to your NAMESPACE (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.0.2
Check: Rd line widths
Result: NOTE
    Rd file 'dynamicFBA.Rd':
     \usage lines wider than 90 characters:
     dynamicFBA(model, substrateRxns, initConcentrations, initBiomass, timeStep, nSteps, exclUptakeRxns,
     \examples lines wider than 100 characters:
     Ec_df <- dynamicFBA(Ec_core,substrateRxns={'EX_glc(e)'},initConcentrations=10,initBiomass=.035,timeStep=.25,nSteps=20,verbose=3 ... [TRUNCATED]
    
    Rd file 'sybilDynFBA-package.Rd':
     \examples lines wider than 100 characters:
     Ec_df <- dynamicFBA(Ec_core,substrateRxns={'EX_glc(e)'},initConcentrations=40,initBiomass=.035,timeStep=.25,nSteps=20,verbose=3 ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64