CRAN Package Check Results for Package sybilDynFBA

Last updated on 2015-07-30 21:47:27.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.2 3.24 37.35 40.58 NOTE
r-devel-linux-x86_64-debian-gcc 0.0.2 3.04 35.94 38.98 NOTE
r-devel-linux-x86_64-fedora-clang 0.0.2 87.52 NOTE
r-devel-linux-x86_64-fedora-gcc 0.0.2 82.98 NOTE
r-devel-osx-x86_64-clang 0.0.2 63.23 NOTE
r-devel-windows-ix86+x86_64 0.0.2 12.00 84.00 96.00 NOTE
r-patched-linux-x86_64 0.0.2 3.43 36.56 40.00 NOTE
r-patched-solaris-sparc 0.0.2 512.70 NOTE
r-patched-solaris-x86 0.0.2 125.20 NOTE
r-release-linux-x86_64 0.0.2 3.14 36.33 39.47 NOTE
r-release-osx-x86_64-mavericks 0.0.2 NOTE
r-release-windows-ix86+x86_64 0.0.2 10.00 86.00 96.00 NOTE
r-oldrel-windows-ix86+x86_64 0.0.2 15.00 76.00 91.00 NOTE

Check Details

Version: 0.0.2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.2
Check: R code for possible problems
Result: NOTE
    dynamicFBA: no visible global function definition for ‘is’
    optsol_dynamicFBA: no visible global function definition for ‘new’
    plot,optsol_dynamicFBA-missing: no visible global function definition
     for ‘par’
    plot,optsol_dynamicFBA-missing: no visible global function definition
     for ‘layout’
    plot,optsol_dynamicFBA-missing: no visible global function definition
     for ‘spline’
    plot,optsol_dynamicFBA-missing: no visible global function definition
     for ‘points’
    plot,optsol_dynamicFBA-missing: no visible global function definition
     for ‘lines’
    plot,optsol_dynamicFBA-missing: no visible global function definition
     for ‘legend’
    Undefined global functions or variables:
     is layout legend lines new par points spline
    Consider adding
     importFrom("graphics", "layout", "legend", "lines", "par", "points")
     importFrom("methods", "is", "new")
     importFrom("stats", "spline")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.0.2
Check: Rd line widths
Result: NOTE
    Rd file 'dynamicFBA.Rd':
     \usage lines wider than 90 characters:
     dynamicFBA(model, substrateRxns, initConcentrations, initBiomass, timeStep, nSteps, exclUptakeRxns,
     \examples lines wider than 100 characters:
     Ec_df <- dynamicFBA(Ec_core,substrateRxns={'EX_glc(e)'},initConcentrations=10,initBiomass=.035,timeStep=.25,nSteps=20,verbose=3 ... [TRUNCATED]
    
    Rd file 'sybilDynFBA-package.Rd':
     \examples lines wider than 100 characters:
     Ec_df <- dynamicFBA(Ec_core,substrateRxns={'EX_glc(e)'},initConcentrations=40,initBiomass=.035,timeStep=.25,nSteps=20,verbose=3 ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64