CRAN Package Check Results for Package sybilDynFBA

Last updated on 2014-04-21 12:43:28.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.2 4.22 47.30 51.52 NOTE
r-devel-linux-x86_64-debian-gcc 0.0.2 4.33 46.92 51.25 NOTE
r-devel-linux-x86_64-fedora-clang 0.0.2 123.99 NOTE
r-devel-linux-x86_64-fedora-gcc 0.0.2 118.69 NOTE
r-devel-osx-x86_64-clang 0.0.2 98.72 NOTE
r-devel-osx-x86_64-gcc 0.0.2 NOTE
r-devel-windows-ix86+x86_64 0.0.2 11.00 63.00 74.00 NOTE
r-patched-linux-x86_64 0.0.2 4.22 47.13 51.36 NOTE
r-patched-solaris-sparc 0.0.2 623.00 NOTE
r-patched-solaris-x86 0.0.2 156.40 NOTE
r-release-linux-x86_64 0.0.2 4.18 47.09 51.26 NOTE
r-release-osx-x86_64-mavericks 0.0.2 WARN
r-release-osx-x86_64-snowleopard 0.0.2 NOTE
r-release-windows-ix86+x86_64 0.0.2 14.00 69.00 83.00 NOTE
r-oldrel-windows-ix86+x86_64 0.0.2 12.00 64.00 76.00 NOTE

Check Details

Version: 0.0.2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.2
Check: Rd line widths
Result: NOTE
    Rd file 'dynamicFBA.Rd':
     \usage lines wider than 90 characters:
     dynamicFBA(model, substrateRxns, initConcentrations, initBiomass, timeStep, nSteps, exclUptakeRxns,
     \examples lines wider than 100 characters:
     Ec_df <- dynamicFBA(Ec_core,substrateRxns={'EX_glc(e)'},initConcentrations=10,initBiomass=.035,timeStep=.25,nSteps=20,verbose=3 ... [TRUNCATED]
    
    Rd file 'sybilDynFBA-package.Rd':
     \examples lines wider than 100 characters:
     Ec_df <- dynamicFBA(Ec_core,substrateRxns={'EX_glc(e)'},initConcentrations=40,initBiomass=.035,timeStep=.25,nSteps=20,verbose=3 ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.0.2
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    63dee39/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 0.0.2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: 'methods'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard