CRAN Package Check Results for Package synbreed

Last updated on 2015-06-30 18:47:36.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.11-10 3.71 54.79 58.50 NOTE
r-devel-linux-x86_64-debian-gcc 0.11-10 3.65 52.44 56.10 NOTE
r-devel-linux-x86_64-fedora-clang 0.11-10 114.61 NOTE
r-devel-linux-x86_64-fedora-gcc 0.11-10 108.46 OK
r-devel-osx-x86_64-clang 0.11-10 85.11 OK
r-devel-windows-ix86+x86_64 0.11-10 10.00 75.00 85.00 NOTE
r-patched-linux-x86_64 0.11-10 3.61 53.24 56.85 OK
r-patched-solaris-sparc 0.11-10 658.90 OK
r-patched-solaris-x86 0.11-10 154.90 OK
r-release-linux-x86_64 0.11-10 3.69 53.20 56.88 OK
r-release-osx-x86_64-mavericks 0.11-10 OK
r-release-windows-ix86+x86_64 0.11-10 19.00 75.00 94.00 OK
r-oldrel-windows-ix86+x86_64 0.11-10 15.00 106.00 121.00 OK

Check Details

Version: 0.11-10
Check: R code for possible problems
Result: NOTE
    LDDist : smooth.fit: no visible global function definition for ‘nls’
    LDDist : smooth.fit: no visible global function definition for ‘coef’
    LDDist : smooth.fit: no visible global function definition for ‘curve’
    LDDist: no visible global function definition for ‘pdf’
    LDDist: no visible global function definition for ‘png’
    LDDist: no visible global function definition for ‘plot’
    LDDist: no visible global function definition for ‘barplot’
    LDDist: no visible global function definition for ‘grey’
    LDDist: no visible global function definition for ‘legend’
    LDDist: no visible global function definition for ‘dev.off’
    LDMap: no visible global function definition for ‘pdf’
    LDMap: no visible global function definition for ‘png’
    LDMap: no visible global function definition for ‘dev.off’
    codeGeno: no visible global function definition for ‘runif’
    codeGeno: no visible global function definition for ‘cor’
    codeGeno: no visible global function definition for ‘write.table’
    create.gpData: no visible global function definition for ‘as.formula’
    create.gpData: no visible global function definition for ‘is’
    crossVal: no visible global function definition for ‘na.omit’
    crossVal: no visible global function definition for ‘runif’
    crossVal: no visible global function definition for ‘write.table’
    crossVal: no visible global function definition for ‘capture.output’
    crossVal: no visible global function definition for ‘cor’
    crossVal: no visible global function definition for ‘lm’
    gpData2data.frame: no visible global function definition for ‘as’
    gpMod: no visible global function definition for ‘terms’
    gpMod: no visible global function definition for ‘as.formula’
    gpMod: no visible global function definition for ‘model.matrix’
    gpMod: no visible binding for global variable ‘na.pass’
    gpMod: no visible global function definition for ‘capture.output’
    kin: no visible global function definition for ‘dist’
    manhattanPlot: no visible global function definition for ‘plot’
    manhattanPlot: no visible global function definition for ‘rainbow’
    manhattanPlot: no visible global function definition for ‘grey’
    manhattanPlot: no visible global function definition for ‘axis’
    manhattanPlot: no visible global function definition for ‘box’
    manhattanPlot: no visible global function definition for ‘points’
    pairwiseLD: no visible global function definition for ‘dist’
    pairwiseLD: no visible global function definition for ‘read.table’
    pairwiseLD: no visible global function definition for ‘cor’
    plot.pedigree: no visible global function definition for ‘plot’
    plot.pedigree: no visible global function definition for ‘axis’
    plot.relationshipMatrix: no visible global function definition for
     ‘quantile’
    plotGenMap: no visible global function definition for ‘par’
    plotGenMap: no visible global function definition for ‘pdf’
    plotGenMap: no visible global function definition for ‘png’
    plotGenMap: no visible global function definition for ‘layout’
    plotGenMap: no visible global function definition for ‘image’
    plotGenMap: no visible global function definition for ‘box’
    plotGenMap: no visible global function definition for ‘axis’
    plotGenMap: no visible global function definition for ‘plot’
    plotGenMap: no visible global function definition for ‘polygon’
    plotGenMap: no visible global function definition for ‘lines’
    plotGenMap: no visible global function definition for ‘text’
    plotGenMap: no visible global function definition for ‘dev.off’
    plotNeighbourLD: no visible global function definition for ‘par’
    plotNeighbourLD: no visible global function definition for ‘pdf’
    plotNeighbourLD: no visible global function definition for ‘png’
    plotNeighbourLD: no visible global function definition for ‘layout’
    plotNeighbourLD: no visible global function definition for ‘plot’
    plotNeighbourLD: no visible global function definition for ‘axis’
    plotNeighbourLD: no visible global function definition for ‘box’
    plotNeighbourLD: no visible global function definition for ‘smooth’
    plotNeighbourLD: no visible global function definition for ‘image’
    plotNeighbourLD: no visible global function definition for ‘polygon’
    plotNeighbourLD: no visible global function definition for ‘text’
    plotNeighbourLD: no visible global function definition for ‘dev.off’
    read.vcf2list: no visible global function definition for ‘read.table’
    read.vcf2matrix: no visible global function definition for ‘read.table’
    simul.phenotype: no visible global function definition for ‘step’
    simul.phenotype: no visible global function definition for ‘rnorm’
    summary.cvData: no visible global function definition for ‘sd’
    summary.gpData: no visible global function definition for ‘as’
    summaryGenMap: no visible global function definition for
     ‘weighted.mean’
    write.beagle: no visible global function definition for ‘str’
    write.beagle: no visible global function definition for ‘write.table’
    write.plink: no visible global function definition for ‘write.table’
    write.relationshipMatrix: no visible global function definition for
     ‘write.table’
    write.vcf: no visible global function definition for ‘str’
    write.vcf: no visible global function definition for ‘write.table’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64