CRAN Package Check Results for Package topicmodels

Last updated on 2016-05-02 21:50:04.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 0.2-3 4.59 88.61 93.20 NOTE
r-devel-linux-x86_64-fedora-clang 0.2-3 168.47 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2-3 164.46 NOTE
r-devel-osx-x86_64-clang 0.2-3 149.22 NOTE
r-devel-windows-ix86+x86_64 0.2-3 25.00 184.00 209.00 OK
r-patched-linux-x86_64 0.2-3 4.54 87.80 92.34 NOTE
r-patched-solaris-sparc 0.2-3 500.90 WARN
r-patched-solaris-x86 0.2-3 94.40 WARN
r-release-linux-x86_64 0.2-3 4.53 149.85 154.38 NOTE
r-release-osx-x86_64-mavericks 0.2-3 NOTE
r-release-windows-ix86+x86_64 0.2-3 26.00 360.00 386.00 OK
r-oldrel-windows-ix86+x86_64 0.2-3 51.00 346.00 397.00 OK

Memtest notes: gcc6-ASAN

Check Details

Version: 0.2-3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘corpus.JSS.papers’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 0.2-3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: NLP
    
    Attaching package: 'XML'
    
    The following object is masked from 'package:tools':
    
     toHTML
    
    
     *** caught segfault ***
    address 0, cause 'memory not mapped'
    
    Traceback:
     1: .Call("rGibbslda", as.integer(x$i), as.integer(x$j), as.integer(x$v), as.integer(x$nrow), as.integer(x$ncol), CONTROL_i, switch(control@initialize, beta = 1L, z = 2L, 0L), !is.null(seedwords), seedwords_matrix, as.integer(k), result_dir, if (is.null(model)) NULL else model@beta, if (is.null(model)) NULL else model@z, PACKAGE = "topicmodels")
     2: method(x, k, control, model, mycall, ...)
     3: LDA(JSS_dtm, k = k, method = "Gibbs", control = list(seed = SEED, burnin = 1000, thin = 100, iter = 1000))
     4: eval(expr, envir, enclos)
     5: eval(expr, .GlobalEnv)
     6: withVisible(eval(expr, .GlobalEnv))
     7: doTryCatch(return(expr), name, parentenv, handler)
     8: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     9: tryCatchList(expr, classes, parentenv, handlers)
    10: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
    11: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
    12: evalFunc(ce, options)
    13: tryCatchList(expr, classes, parentenv, handlers)
    14: tryCatch(evalFunc(ce, options), finally = { cat("\n") sink()})
    15: driver$runcode(drobj, chunk, chunkopts)
    16: utils::Sweave(...)
    17: engine$weave(file, quiet = quiet, encoding = enc)
    18: doTryCatch(return(expr), name, parentenv, handler)
    19: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    20: tryCatchList(expr, classes, parentenv, handlers)
    21: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
    22: buildVignettes(dir = "/home/ripley/R/packages/tests32/topicmodels.Rcheck/vign_test/topicmodels")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-sparc

Version: 0.2-3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: NLP
    
    Attaching package: 'XML'
    
    The following object is masked from 'package:tools':
    
     toHTML
    
    
     *** caught segfault ***
    address fd15ded4, cause 'memory not mapped'
    
    Traceback:
     1: .Call("rGibbslda", as.integer(x$i), as.integer(x$j), as.integer(x$v), as.integer(x$nrow), as.integer(x$ncol), CONTROL_i, switch(control@initialize, beta = 1L, z = 2L, 0L), !is.null(seedwords), seedwords_matrix, as.integer(k), result_dir, if (is.null(model)) NULL else model@beta, if (is.null(model)) NULL else model@z, PACKAGE = "topicmodels")
     2: method(x, k, control, model, mycall, ...)
     3: LDA(JSS_dtm, k = k, method = "Gibbs", control = list(seed = SEED, burnin = 1000, thin = 100, iter = 1000))
     4: eval(expr, envir, enclos)
     5: eval(expr, .GlobalEnv)
     6: withVisible(eval(expr, .GlobalEnv))
     7: doTryCatch(return(expr), name, parentenv, handler)
     8: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     9: tryCatchList(expr, classes, parentenv, handlers)
    10: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
    11: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
    12: evalFunc(ce, options)
    13: tryCatchList(expr, classes, parentenv, handlers)
    14: tryCatch(evalFunc(ce, options), finally = { cat("\n") sink()})
    15: driver$runcode(drobj, chunk, chunkopts)
    16: utils::Sweave(...)
    17: engine$weave(file, quiet = quiet, encoding = enc)
    18: doTryCatch(return(expr), name, parentenv, handler)
    19: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    20: tryCatchList(expr, classes, parentenv, handlers)
    21: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
    22: buildVignettes(dir = "/home/ripley/R/packages/tests32/topicmodels.Rcheck/vign_test/topicmodels")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86