CRAN Package Check Results for Package treecm

Last updated on 2014-04-21 04:48:49.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 1.72 23.00 24.73 NOTE
r-devel-linux-x86_64-debian-gcc 1.2 1.65 22.96 24.61 NOTE
r-devel-linux-x86_64-fedora-clang 1.2 53.46 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2 52.28 NOTE
r-devel-macosx-x86_64-clang 1.2 50.89 NOTE
r-devel-macosx-x86_64-gcc 1.2 WARN
r-devel-windows-ix86+x86_64 1.2 4.00 41.00 45.00 NOTE
r-patched-linux-x86_64 1.2 1.53 22.68 24.21 NOTE
r-patched-solaris-sparc 1.2 270.30 NOTE
r-patched-solaris-x86 1.2 65.60 NOTE
r-release-linux-ix86 NOTE
r-release-linux-x86_64 1.2 1.52 23.01 24.53 NOTE
r-release-macosx-x86_64 1.2 NOTE
r-release-windows-ix86+x86_64 1.2 7.00 43.00 50.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2 6.00 40.00 46.00 NOTE

Check Details

Version: 1.2
Check: R code for possible problems
Result: NOTE
    centreOfMass: no visible binding for global variable ‘toBePruned’
    getPlinthForce: no visible binding for global variable ‘tilt’
    getPlinthForce: no visible binding for global variable ‘azimuth’
    getPlinthForce: no visible binding for global variable ‘l.z’
    getPlinthForce: no visible binding for global variable ‘l.x’
    getPlinthForce: no visible binding for global variable ‘l.y’
    plot.SR: no visible binding for global variable ‘SR’
    summary.CM: no visible binding for global variable ‘CM’
    treeBiomass: no visible binding for global variable ‘allometryFUN’
    treeSR: no visible binding for global variable ‘dBase’
    treeSR: no visible binding for global variable ‘tilt’
    treeVectors: no visible binding for global variable ‘azimuth’
    treeVectors: no visible binding for global variable ‘tipD’
    treeVectors: no visible binding for global variable ‘biomass’
    treeVectors: no visible binding for global variable ‘height’
    treeVectors: no visible binding for global variable ‘tilt’
    treeVectors: no visible binding for global variable ‘toBePruned’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘Makefile’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.2
Check: Rd line widths
Result: NOTE
    Rd file 'stonePine1TreeData.Rd':
     \examples lines wider than 100 characters:
     treeData <- importFieldData(system.file("data/stonePine1FieldData.csv.gz", package = "treecm"), 650, allometryABDC)
    
    Rd file 'stonePine2FieldData.Rd':
     \examples lines wider than 100 characters:
     treeData <- importFieldData(system.file("data/stonePine2FieldData.csv.gz", package = "treecm"), 650, allometryABDC)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘ggplot2’
Flavor: r-devel-macosx-x86_64-gcc

Version: 1.2
Check: running R code from vignettes
Result: WARNING
    Errors in running code in vignettes:
    when running code in ‘treecm.Rnw’
     ...
    3 15647.68 15.53446 8.57 19 8.439802 50
    4 15373.36 16.64384 8.57 20 8.439802 50
    5 15143.56 17.74123 8.57 21 8.439802 50
    6 14948.51 18.82857 8.57 22 8.439802 50
    
    > library(ggplot2)
    
     When sourcing ‘treecm.R’:
    Error: there is no package called ‘ggplot2’
    Execution halted
Flavor: r-devel-macosx-x86_64-gcc

Version: 1.2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    Error: processing vignette 'treecm.Rnw' failed with diagnostics:
     chunk 14 (label = exStabilization5)
    Error in library(ggplot2) : there is no package called ‘ggplot2’
    Execution halted
Flavor: r-devel-macosx-x86_64-gcc

Version: 1.2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    'opts' is deprecated. Use 'theme' instead. (Deprecated; last used in version 0.9.1)
    theme_rect is deprecated. Use 'element_rect' instead. (Deprecated; last used in version 0.9.1)
    Setting the plot title with opts(title="...") is deprecated.
     Use labs(title="...") or ggtitle("...") instead. (Deprecated; last used in version 0.9.1)
    Mapping a variable to y and also using stat="bin".
     With stat="bin", it will attempt to set the y value to the count of cases in each group.
     This can result in unexpected behavior and will not be allowed in a future version of ggplot2.
     If you want y to represent counts of cases, use stat="bin" and don't map a variable to y.
     If you want y to represent values in the data, use stat="identity".
     See ?geom_bar for examples. (Deprecated; last used in version 0.9.2)
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'treecm.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `sidecap.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    treecm.Rcheck/vign_test/treecm/vignettes/treecm.tex:5: ==> Fatal error occurre
    d, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-macosx-x86_64