CRAN Package Check Results for Package turboEM

Last updated on 2014-07-31 03:48:42.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2012.2-1 1.20 21.94 23.14 NOTE
r-devel-linux-x86_64-debian-gcc 2012.2-1 1.20 22.17 23.37 NOTE
r-devel-linux-x86_64-fedora-clang 2012.2-1 49.87 NOTE
r-devel-linux-x86_64-fedora-gcc 2012.2-1 47.77 NOTE
r-devel-osx-x86_64-clang 2012.2-1 44.05 NOTE
r-devel-windows-ix86+x86_64 2012.2-1 4.00 35.00 39.00 NOTE
r-patched-linux-x86_64 2012.2-1 1.18 22.03 23.20 NOTE
r-patched-solaris-sparc 2012.2-1 247.20 NOTE
r-patched-solaris-x86 2012.2-1 63.70 NOTE
r-release-linux-ix86 2012.2-1 1.64 30.00 31.65 NOTE
r-release-linux-x86_64 2012.2-1 1.23 22.49 23.72 NOTE
r-release-osx-x86_64-mavericks 2012.2-1 NOTE
r-release-osx-x86_64-snowleopard 2012.2-1 NOTE
r-release-windows-ix86+x86_64 2012.2-1 9.00 50.00 59.00 NOTE
r-oldrel-windows-ix86+x86_64 2012.2-1 9.00 203.00 212.00 NOTE

Check Details

Version: 2012.2-1
Check: for hidden files and directories
Result: NOTE
    Found the following hidden files and directories:
     inst/doc/.Rhistory
    These were most likely included in error. See section Package
    structure in the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2012.2-1
Check: top-level files
Result: NOTE
    File
     LICENSE
    is not mentioned in the DESCRIPTION file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2012.2-1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to numDeriv which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     foreach methods quantreg
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2012.2-1
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in inst/doc :
     turboEM.Rnw
    A vignettes directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 2012.2-1
Check: Rd line widths
Result: NOTE
    Rd file 'internal.Rd':
     \usage lines wider than 90 characters:
     accelerate(par, fixptfn, objfn, method = c("em", "squarem", "pem", "decme", "qn"), boundary = NULL, pconstr = NULL, project = N ... [TRUNCATED]
    
    Rd file 'turbo.Rd':
     \usage lines wider than 90 characters:
     plot(x, which.methods = seq_along(x$method), method.names = x$method[which.methods], xlim, ylim, ...)
     grad(x, objfn=x$objfn, which.methods = seq_along(x$method), method.names = x$method[which.methods], ...)
     hessian(x, objfn=x$objfn, which.methods = seq_along(x$method), method.names = x$method[which.methods], ...)
     stderror(x, objfn=x$objfn, which.methods = seq_along(x$method), method.names = x$method[which.methods], ...)
     \examples lines wider than 100 characters:
     res2 <- turboem(par=p0, y=y, fixptfn=fixptfn, objfn=objfn, method=c("EM", "squarem", "pem", "decme"))
     res1keep <- turboem(par=p0, y=y, fixptfn=fixptfn, objfn=objfn, method=c("EM", "squarem", "pem"), control.run=list(keep.objfval=TRUE))
    
    Rd file 'turboSim.Rd':
     \usage lines wider than 90 characters:
     turboSim(parmat, fixptfn, objfn, method = c("em", "squarem", "pem", "decme", "qn"),
     method.names, keep.pars = FALSE, ..., control.method = replicate(length(method),list()), control.run = list())
    
    Rd file 'turboem.Rd':
     \usage lines wider than 90 characters:
     boundary, pconstr = NULL, project = NULL, parallel = FALSE, ..., control.method = replicate(length(method),list()),
     \examples lines wider than 100 characters:
     # If no objective function is provided, the "squarem" method defaults to Squarem-2 (or if control parameter K > 1, to Cyclem-2). Compar ... [TRUNCATED]
    
    Rd file 'turbosimMethods.Rd':
     \usage lines wider than 90 characters:
     summary(object, which.methods = seq_along(object$method), method.names = object$method.names[which.methods], eps = 0.1, sol = NULL, ... ... [TRUNCATED]
     boxplot(x, which.methods = seq_along(x$method), method.names = x$method.names[which.methods], whichfail = (x$fail | !x$conv)[,which.met ... [TRUNCATED]
     dataprof(x, which.methods = seq_along(x$method), method.names = x$method.names[which.methods], whichfail = (x$fail | !x$conv)[,which.me ... [TRUNCATED]
     pairs(x, which.methods=seq_along(x$method), method.names = x$method.names[which.methods], whichfail = (x$fail | !x$conv)[,which.methods ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2012.2-1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'numDeriv' which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     'foreach' 'methods' 'quantreg'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard

Version: 2012.2-1
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in 'inst/doc':
     'turboEM.Rnw'
    A 'vignettes' directory will be required as from R 3.1.0
Flavor: r-oldrel-windows-ix86+x86_64