CRAN Package Check Results for Package tuts

Last updated on 2019-03-19 20:47:12 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.1 6.22 96.11 102.33 WARN
r-devel-linux-x86_64-debian-gcc 0.1.1 5.85 71.66 77.51 OK
r-devel-linux-x86_64-fedora-clang 0.1.1 127.09 OK
r-devel-linux-x86_64-fedora-gcc 0.1.1 120.97 OK
r-devel-windows-ix86+x86_64 0.1.1 15.00 95.00 110.00 ERROR
r-patched-linux-x86_64 0.1.1 4.30 91.80 96.10 OK
r-patched-solaris-x86 0.1.1 370.10 OK
r-release-linux-x86_64 0.1.1 4.32 90.73 95.05 OK
r-release-windows-ix86+x86_64 0.1.1 11.00 171.00 182.00 OK
r-release-osx-x86_64 0.1.1 OK
r-oldrel-windows-ix86+x86_64 0.1.1 9.00 189.00 198.00 OK
r-oldrel-osx-x86_64 0.1.1 OK

Check Details

Version: 0.1.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: unable to re-encode 'a_tuPN.R' lines 194, 296
     Warning: unable to re-encode 'a_tuar1.R' line 263
     Warning: unable to re-encode 'a_tubfs.R' lines 25, 282, 435
     Warning: unable to re-encode 'b_tupoisBFS.R' lines 23, 261, 417
     Warning: unable to re-encode 'b_tupoisPN.R' lines 200, 304
     Warning: unable to re-encode 'c_additional_functions.r' lines 59, 146
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.1
Check: for unstated dependencies in examples
Result: WARN
    Warning in parse(file = files, n = -1L) :
     invalid input found on input connection 'tuts-Ex.R'
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.1
Check: examples
Result: ERROR
    Running examples in 'tuts-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: plot.tuts_poisBFS
    > ### Title: Plots and visual diagnostics of tuts_BFS objects
    > ### Aliases: plot.tuts_poisBFS
    >
    > ### ** Examples
    >
    > # Note: Most of models included in tuts package are computationally intensive. In the example
    > # below I set parameters to meet CRAN<c2><92>s testing requirement of maximum 5 sec per example.
    > # A more practical example would contain N=50 in the first line of the code and n.sim=10000.
    >
    > #1. Import or simulate the data (simulation is chosen for illustrative purposes):
    > DATA=simtuts(N=7,Harmonics=c(2,0,0), sin.ampl=c(10,0, 0), cos.ampl=c(0,0,0),
    + trend=0,y.sd=2, ti.sd=0.2)
    > y=DATA$observed$y.obs
    > y=round(y-min(y))
    > ti.mu=DATA$observed$ti.obs.tnorm
    > ti.sd= rep(0.2, length(ti.mu))
    >
    > #2. Fit the model:
    > n.sim=10
    > TUPOIS=tupoisbsf(y=y,ti.mu=ti.mu,ti.sd=ti.sd,freqs='internal',n.sim=n.sim,n.chains=2,
    + CV=TRUE,n.cores=2)
    Compiling model graph
     Resolving undeclared variables
     Allocating nodes
    Graph information:
     Observed stochastic nodes: 7
     Unobserved stochastic nodes: 23
     Total graph size: 388
    
    Initializing model
    
    [1] Cross-validation of the model....
    >
    > #3. Generate plots and diagnostics of the model (optional parameters are listed in brackets):
    > plot(TUPOIS,type='periodogram') # spectral analysis (CI, burn).
    > plot(TUPOIS,type='predTUTS', CI=0.99) # One step predictions (CI, burn).
    > plot(TUPOIS,type='cv') # 5 fold cross validation (CI, burn).
    > plot(TUPOIS,type='GR') # Gelman-Rubin diagnostics (CI, burn).
    > plot(TUPOIS,type='mcmc') # MCMC diagnostics.
    
    
    Preparing plots for const. 3% complete.
    
    Preparing plots for IBeta. 6% complete.
    
    Preparing plots for IBeta. 9% complete.
    
    Preparing plots for IBeta. 12% complete.
    
    Preparing plots for IBeta. 15% complete.
    
    Preparing plots for IBeta. 18% complete.
    
    Preparing plots for IBeta. 21% complete.
    
    Preparing plots for alpha1. 24% complete.
    
    Preparing plots for alpha2. 27% complete.
    
    Preparing plots for alpha3. 30% complete.
    
    Preparing plots for Spectrum. 33% complete.
    
    Preparing plots for Spectrum. 36% complete.
    
    Preparing plots for Spectrum. 39% complete.
    
    Preparing plots for ti.sim. 42% complete.
    
    Preparing plots for ti.sim. 45% complete.
    
    Preparing plots for ti.sim. 48% complete.
    
    Preparing plots for ti.sim. 52% complete.
    
    Preparing plots for ti.sim. 55% complete.
    
    Preparing plots for ti.sim. 58% complete.
    
    Preparing plots for ti.sim. 61% complete.
    
    Preparing plots for beta. 64% complete.
    
    Preparing plots for beta. 67% complete.
    
    Preparing plots for beta. 70% complete.
    
    Preparing plots for beta. 73% complete.
    
    Preparing plots for beta. 76% complete.
    
    Preparing plots for beta. 79% complete.
    
    Preparing plots for lambda. 82% complete.
    
    Preparing plots for lambda. 85% complete.
    
    Preparing plots for lambda. 88% complete.
    
    Preparing plots for lambda. 91% complete.
    
    Preparing plots for lambda. 94% complete.
    
    Preparing plots for lambda. 97% complete.
    
    Preparing plots for lambda. 100% complete.
    
    > plot(TUPOIS,type='lambda') # Realizaitons of lambda.
    >
    >
    >
    > cleanEx()
    Error: connections left open:
     modelstring (textConnection)
    Execution halted
Flavor: r-devel-windows-ix86+x86_64