CRAN Package Check Results for Package uniCox

Last updated on 2017-03-23 03:48:23.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 2.69 68.81 71.50 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 2.65 68.65 71.30 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 231.23 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.0 225.19 NOTE --no-stop-on-test-error
r-devel-macos-x86_64-clang 1.0 93.91 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.0 10.00 262.00 272.00 NOTE
r-patched-linux-x86_64 1.0 2.45 65.78 68.23 NOTE
r-patched-solaris-sparc 1.0 904.90 NOTE
r-patched-solaris-x86 1.0 200.50 NOTE
r-release-linux-x86_64 1.0 2.41 64.74 67.15 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 12.00 255.00 267.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 12.00 322.00 334.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘survival’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     predict.uniCox print.uniCoxCVFit print.uniCoxFit
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    permute.rows: no visible global function definition for ‘runif’
    uniCox: no visible global function definition for ‘quantile’
    uniCoxCV: no visible global function definition for ‘quantile’
    uniCoxCV: no visible global function definition for ‘coxph’
    uniCoxCV: no visible binding for global variable ‘var’
    Undefined global functions or variables:
     coxph quantile runif var
    Consider adding
     importFrom("stats", "quantile", "runif", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.0
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'predict.uniCox':
     ‘predict.uniCox’
    
    S3 methods shown with full name in documentation object 'uniCox-internal':
     ‘print.uniCoxCVFit’ ‘print.uniCoxFit’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: compiled code
Result: NOTE
    File ‘uniCox/libs/uniCox.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0
Flags: --no-stop-on-test-error
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘survival’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.0
Flags: --no-stop-on-test-error
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     predict.uniCox print.uniCoxCVFit print.uniCoxFit
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.0
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    permute.rows: no visible global function definition for ‘runif’
    uniCox: no visible global function definition for ‘quantile’
    uniCoxCV: no visible global function definition for ‘quantile’
    uniCoxCV: no visible global function definition for ‘coxph’
    uniCoxCV: no visible binding for global variable ‘var’
    Undefined global functions or variables:
     coxph quantile runif var
    Consider adding
     importFrom("stats", "quantile", "runif", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.0
Flags: --no-stop-on-test-error
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'predict.uniCox':
     ‘predict.uniCox’
    
    S3 methods shown with full name in documentation object 'uniCox-internal':
     ‘print.uniCoxCVFit’ ‘print.uniCoxFit’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.0
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘uniCox/libs/uniCox.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.0
Check: R code for possible problems
Result: NOTE
    uniCoxCV: no visible global function definition for 'coxph'
Flavor: r-oldrel-windows-ix86+x86_64