CRAN Package Check Results for Package unmarked

Last updated on 2014-04-25 05:47:27.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.10-3 23.64 42.98 66.63 ERROR
r-devel-linux-x86_64-debian-gcc 0.10-3 27.25 42.81 70.06 ERROR
r-devel-linux-x86_64-fedora-clang 0.10-3 127.97 ERROR
r-devel-linux-x86_64-fedora-gcc 0.10-3 149.15 ERROR
r-devel-osx-x86_64-clang 0.10-3 85.64 ERROR
r-devel-osx-x86_64-gcc 0.10-3 WARN
r-devel-windows-ix86+x86_64 0.10-3 69.00 88.00 157.00 ERROR
r-patched-linux-x86_64 0.10-3 27.39 42.37 69.76 ERROR
r-patched-solaris-sparc 0.10-3 824.20 ERROR --no-vignettes
r-patched-solaris-x86 0.10-3 160.00 ERROR
r-release-linux-ix86 0.10-3 46.00 167.00 213.00 NOTE
r-release-linux-x86_64 0.10-3 27.28 42.92 70.20 ERROR
r-release-osx-x86_64-mavericks 0.10-3 WARN
r-release-osx-x86_64-snowleopard 0.10-3 OK
r-release-windows-ix86+x86_64 0.10-3 89.00 80.00 169.00 ERROR
r-oldrel-windows-ix86+x86_64 0.10-3 83.00 80.00 163.00 ERROR

Check Details

Version: 0.10-3
Check: examples
Result: ERROR
    Running examples in ‘unmarked-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: [-methods
    > ### Title: Methods for bracket extraction [ in Package 'unmarked'
    > ### Aliases: [-methods [,unmarkedEstimateList,ANY,ANY,ANY-method
    > ### [,unmarkedFit,ANY,ANY,ANY-method
    > ### [,unmarkedFrame,missing,numeric,missing-method
    > ### [,unmarkedFrame,numeric,missing,missing-method
    > ### [,unmarkedFrame,numeric,numeric,missing-method
    > ### [,unmarkedMultFrame,missing,numeric,missing-method
    > ### [,unmarkedMultFrame,numeric,missing,missing-method
    > ### [,unmarkedFrameGMM,numeric,missing,missing-method
    > ### [,unmarkedFrameGDS,numeric,missing,missing-method
    > ### [,unmarkedFramePCO,numeric,missing,missing-method
    > ### [,unmarkedFramePCO,missing,numeric,missing-method
    > ### [,unmarkedFrameGPC,numeric,missing,missing-method
    > ### [,unmarkedFrameGPC,missing,numeric,missing-method
    > ### [,unmarkedFrame,list,missing,missing-method
    > ### Keywords: methods
    >
    > ### ** Examples
    >
    >
    > data(mallard)
    > mallardUMF <- unmarkedFramePCount(mallard.y, siteCovs = mallard.site,
    + obsCovs = mallard.obs)
    > summary(mallardUMF)
    unmarkedFrame Object
    
    239 sites
    Maximum number of observations per site: 3
    Mean number of observations per site: 2.76
    Sites with at least one detection: 40
    
    Tabulation of y observations:
     0 1 2 3 4 7 10 12 <NA>
     576 54 11 9 6 1 1 1 58
    
    Site-level covariates:
     elev length forest
     Min. :-1.436000 Min. :-4.945000 Min. :-1.2650000
     1st Qu.:-0.956500 1st Qu.:-0.563000 1st Qu.:-0.9560000
     Median :-0.198000 Median : 0.045000 Median :-0.0650000
     Mean :-0.000046 Mean :-0.000029 Mean : 0.0000669
     3rd Qu.: 0.994000 3rd Qu.: 0.626000 3rd Qu.: 0.7900000
     Max. : 2.434000 Max. : 2.255000 Max. : 2.2990000
    
    Observation-level covariates:
     ivel date
     Min. :-1.75300 Min. :-2.90400
     1st Qu.:-0.66600 1st Qu.:-1.11900
     Median :-0.13900 Median :-0.11900
     Mean : 0.00002 Mean : 0.00007
     3rd Qu.: 0.54900 3rd Qu.: 1.31000
     Max. : 5.98000 Max. : 3.81000
     NA's :52 NA's :42
    >
    > mallardUMF[1:5,]
    Error in .local(x, i, ...) : could not find function "ldply"
    Calls: [ -> [ -> .local
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.10-3
Check: installed package size
Result: NOTE
     installed size is 5.5Mb
     sub-directories of 1Mb or more:
     doc 1.6Mb
     libs 2.7Mb
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 0.10-3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘raster’
Flavor: r-devel-osx-x86_64-gcc

Version: 0.10-3
Check: running R code from vignettes
Result: WARNING
    Errors in running code in vignettes:
    when running code in ‘spp-dist.Rnw’
     ...
     rename, round_any
    
    Loading required package: lattice
    Loading required package: Rcpp
    
    > library(raster)
    
     When sourcing ‘spp-dist.R’:
    Error: there is no package called ‘raster’
    Execution halted
Flavor: r-devel-osx-x86_64-gcc

Version: 0.10-3
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: reshape
    Loading required package: plyr
    
    Attaching package: ‘reshape’
    
    The following objects are masked from ‘package:plyr’:
    
     rename, round_any
    
    Loading required package: lattice
    Loading required package: Rcpp
    
    Error: processing vignette 'spp-dist.Rnw' failed with diagnostics:
     chunk 2
    Error in library(raster) : there is no package called ‘raster’
    Execution halted
Flavor: r-devel-osx-x86_64-gcc

Version: 0.10-3
Check: running examples for arch 'i386'
Result: ERROR
    Running examples in 'unmarked-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: [-methods
    > ### Title: Methods for bracket extraction [ in Package 'unmarked'
    > ### Aliases: [-methods [,unmarkedEstimateList,ANY,ANY,ANY-method
    > ### [,unmarkedFit,ANY,ANY,ANY-method
    > ### [,unmarkedFrame,missing,numeric,missing-method
    > ### [,unmarkedFrame,numeric,missing,missing-method
    > ### [,unmarkedFrame,numeric,numeric,missing-method
    > ### [,unmarkedMultFrame,missing,numeric,missing-method
    > ### [,unmarkedMultFrame,numeric,missing,missing-method
    > ### [,unmarkedFrameGMM,numeric,missing,missing-method
    > ### [,unmarkedFrameGDS,numeric,missing,missing-method
    > ### [,unmarkedFramePCO,numeric,missing,missing-method
    > ### [,unmarkedFramePCO,missing,numeric,missing-method
    > ### [,unmarkedFrameGPC,numeric,missing,missing-method
    > ### [,unmarkedFrameGPC,missing,numeric,missing-method
    > ### [,unmarkedFrame,list,missing,missing-method
    > ### Keywords: methods
    >
    > ### ** Examples
    >
    >
    > data(mallard)
    > mallardUMF <- unmarkedFramePCount(mallard.y, siteCovs = mallard.site,
    + obsCovs = mallard.obs)
    > summary(mallardUMF)
    unmarkedFrame Object
    
    239 sites
    Maximum number of observations per site: 3
    Mean number of observations per site: 2.76
    Sites with at least one detection: 40
    
    Tabulation of y observations:
     0 1 2 3 4 7 10 12 <NA>
     576 54 11 9 6 1 1 1 58
    
    Site-level covariates:
     elev length forest
     Min. :-1.436000 Min. :-4.945000 Min. :-1.2650000
     1st Qu.:-0.956500 1st Qu.:-0.563000 1st Qu.:-0.9560000
     Median :-0.198000 Median : 0.045000 Median :-0.0650000
     Mean :-0.000046 Mean :-0.000029 Mean : 0.0000669
     3rd Qu.: 0.994000 3rd Qu.: 0.626000 3rd Qu.: 0.7900000
     Max. : 2.434000 Max. : 2.255000 Max. : 2.2990000
    
    Observation-level covariates:
     ivel date
     Min. :-1.75300 Min. :-2.90400
     1st Qu.:-0.66600 1st Qu.:-1.11900
     Median :-0.13900 Median :-0.11900
     Mean : 0.00002 Mean : 0.00007
     3rd Qu.: 0.54900 3rd Qu.: 1.31000
     Max. : 5.98000 Max. : 3.81000
     NA's :52 NA's :42
    >
    > mallardUMF[1:5,]
    Error in .local(x, i, ...) : could not find function "ldply"
    Calls: [ -> [ -> .local
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.10-3
Check: running examples for arch 'x64'
Result: ERROR
    Running examples in 'unmarked-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: [-methods
    > ### Title: Methods for bracket extraction [ in Package 'unmarked'
    > ### Aliases: [-methods [,unmarkedEstimateList,ANY,ANY,ANY-method
    > ### [,unmarkedFit,ANY,ANY,ANY-method
    > ### [,unmarkedFrame,missing,numeric,missing-method
    > ### [,unmarkedFrame,numeric,missing,missing-method
    > ### [,unmarkedFrame,numeric,numeric,missing-method
    > ### [,unmarkedMultFrame,missing,numeric,missing-method
    > ### [,unmarkedMultFrame,numeric,missing,missing-method
    > ### [,unmarkedFrameGMM,numeric,missing,missing-method
    > ### [,unmarkedFrameGDS,numeric,missing,missing-method
    > ### [,unmarkedFramePCO,numeric,missing,missing-method
    > ### [,unmarkedFramePCO,missing,numeric,missing-method
    > ### [,unmarkedFrameGPC,numeric,missing,missing-method
    > ### [,unmarkedFrameGPC,missing,numeric,missing-method
    > ### [,unmarkedFrame,list,missing,missing-method
    > ### Keywords: methods
    >
    > ### ** Examples
    >
    >
    > data(mallard)
    > mallardUMF <- unmarkedFramePCount(mallard.y, siteCovs = mallard.site,
    + obsCovs = mallard.obs)
    > summary(mallardUMF)
    unmarkedFrame Object
    
    239 sites
    Maximum number of observations per site: 3
    Mean number of observations per site: 2.76
    Sites with at least one detection: 40
    
    Tabulation of y observations:
     0 1 2 3 4 7 10 12 <NA>
     576 54 11 9 6 1 1 1 58
    
    Site-level covariates:
     elev length forest
     Min. :-1.436000 Min. :-4.945000 Min. :-1.2650000
     1st Qu.:-0.956500 1st Qu.:-0.563000 1st Qu.:-0.9560000
     Median :-0.198000 Median : 0.045000 Median :-0.0650000
     Mean :-0.000046 Mean :-0.000029 Mean : 0.0000669
     3rd Qu.: 0.994000 3rd Qu.: 0.626000 3rd Qu.: 0.7900000
     Max. : 2.434000 Max. : 2.255000 Max. : 2.2990000
    
    Observation-level covariates:
     ivel date
     Min. :-1.75300 Min. :-2.90400
     1st Qu.:-0.66600 1st Qu.:-1.11900
     Median :-0.13900 Median :-0.11900
     Mean : 0.00002 Mean : 0.00007
     3rd Qu.: 0.54900 3rd Qu.: 1.31000
     Max. : 5.98000 Max. : 3.81000
     NA's :52 NA's :42
    >
    > mallardUMF[1:5,]
    Error in .local(x, i, ...) : could not find function "ldply"
    Calls: [ -> [ -> .local
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.10-3
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 6.4Mb
     sub-directories of 1Mb or more:
     doc 1.9Mb
     libs 3.1Mb
Flavor: r-patched-solaris-sparc

Version: 0.10-3
Flags: --no-vignettes
Check: examples
Result: ERROR
    Running examples in ‘unmarked-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: [-methods
    > ### Title: Methods for bracket extraction [ in Package 'unmarked'
    > ### Aliases: [-methods [,unmarkedEstimateList,ANY,ANY,ANY-method
    > ### [,unmarkedFit,ANY,ANY,ANY-method
    > ### [,unmarkedFrame,missing,numeric,missing-method
    > ### [,unmarkedFrame,numeric,missing,missing-method
    > ### [,unmarkedFrame,numeric,numeric,missing-method
    > ### [,unmarkedMultFrame,missing,numeric,missing-method
    > ### [,unmarkedMultFrame,numeric,missing,missing-method
    > ### [,unmarkedFrameGMM,numeric,missing,missing-method
    > ### [,unmarkedFrameGDS,numeric,missing,missing-method
    > ### [,unmarkedFramePCO,numeric,missing,missing-method
    > ### [,unmarkedFramePCO,missing,numeric,missing-method
    > ### [,unmarkedFrameGPC,numeric,missing,missing-method
    > ### [,unmarkedFrameGPC,missing,numeric,missing-method
    > ### [,unmarkedFrame,list,missing,missing-method
    > ### Keywords: methods
    >
    > ### ** Examples
    >
    >
    > data(mallard)
    > mallardUMF <- unmarkedFramePCount(mallard.y, siteCovs = mallard.site,
    + obsCovs = mallard.obs)
    > summary(mallardUMF)
    unmarkedFrame Object
    
    239 sites
    Maximum number of observations per site: 3
    Mean number of observations per site: 2.76
    Sites with at least one detection: 40
    
    Tabulation of y observations:
     0 1 2 3 4 7 10 12 <NA>
     576 54 11 9 6 1 1 1 58
    
    Site-level covariates:
     elev length forest
     Min. :-1.436000 Min. :-4.945000 Min. :-1.2650000
     1st Qu.:-0.956500 1st Qu.:-0.563000 1st Qu.:-0.9560000
     Median :-0.198000 Median : 0.045000 Median :-0.0650000
     Mean :-0.000046 Mean :-0.000029 Mean : 0.0000669
     3rd Qu.: 0.994000 3rd Qu.: 0.626000 3rd Qu.: 0.7900000
     Max. : 2.434000 Max. : 2.255000 Max. : 2.2990000
    
    Observation-level covariates:
     ivel date
     Min. :-1.75300 Min. :-2.90400
     1st Qu.:-0.66600 1st Qu.:-1.11900
     Median :-0.13900 Median :-0.11900
     Mean : 0.00002 Mean : 0.00007
     3rd Qu.: 0.54900 3rd Qu.: 1.31000
     Max. : 5.98000 Max. : 3.81000
     NA's :52 NA's :42
    >
    > mallardUMF[1:5,]
    Error in .local(x, i, ...) : could not find function "ldply"
    Calls: [ -> [ -> .local
    Execution halted
Flavor: r-patched-solaris-sparc

Version: 0.10-3
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: reshape
    Loading required package: plyr
    
    Attaching package: ‘reshape’
    
    The following objects are masked from ‘package:plyr’:
    
     rename, round_any
    
    Loading required package: lattice
    Loading required package: Rcpp
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'cap-recap.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `fullpage.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    n_test/unmarked/vignettes/cap-recap.tex:7: ==> Fatal error occurred, no output
     PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.10-3
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    55d9040/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks