CRAN Package Check Results for Package upclass

Last updated on 2014-09-01 19:46:38.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 0.80 12.52 13.31 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 0.80 12.70 13.50 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 31.38 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 30.53 NOTE
r-devel-osx-x86_64-clang 1.0 28.30 NOTE
r-devel-windows-ix86+x86_64 1.0 4.00 22.00 26.00 NOTE
r-patched-linux-x86_64 1.0 0.83 13.08 13.92 NOTE
r-patched-solaris-sparc 1.0 158.10 NOTE
r-patched-solaris-x86 1.0 44.60 NOTE
r-release-linux-ix86 1.0 1.26 19.87 21.13 NOTE
r-release-linux-x86_64 1.0 0.86 13.36 14.22 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-osx-x86_64-snowleopard 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 4.00 37.00 41.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 4.00 25.00 29.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘classifly’ ‘gclus’ ‘mclust’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    noupclassifymodel: no visible global function definition for ‘unmap’
    noupclassifymodel: no visible global function definition for ‘mstep’
    noupclassifymodel: no visible global function definition for ‘map’
    noupclassifymodel: no visible global function definition for ‘bic’
    upclassifymodel: no visible global function definition for ‘unmap’
    upclassifymodel: no visible global function definition for ‘mstep’
    upclassifymodel: no visible global function definition for ‘map’
    upclassifymodel: no visible global function definition for ‘bic’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.0
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in ‘inst/doc’:
     ‘manual.Rnw’
    A ‘vignettes’ directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘LICENSE.txt’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'noupclassify.Rd':
     \usage lines wider than 90 characters:
     noupclassify(Xtrain, cltrain, Xtest, cltest = NULL, modelscope = NULL, reportrate = TRUE, ...)
    
    Rd file 'noupclassifymodel.Rd':
     \usage lines wider than 90 characters:
     noupclassifymodel(Xtrain, cltrain, Xtest, cltest = NULL, modelName = "EEE", reportrate = TRUE, ...)
     \examples lines wider than 100 characters:
     fitnoup <- noupclassifymodel(Xtrain = X[indtrain,], cltrain = cl[indtrain], Xtest = X[indtest, ], cltest = cl[indtest])
    
    Rd file 'plot.upclassfit.Rd':
     \examples lines wider than 100 characters:
     fitup <- upclassifymodel(Xtrain = X[indtrain,], cltrain = cl[indtrain], Xtest = X[indtest, ], cltest = cl[indtest])
    
    Rd file 'print.upclassfit.Rd':
     \examples lines wider than 100 characters:
     fitup <- upclassifymodel(Xtrain = X[indtrain,], cltrain = cl[indtrain], Xtest = X[indtest, ], cltest = cl[indtest])
    
    Rd file 'summary.upclassfit.Rd':
     \examples lines wider than 100 characters:
     fitup <- upclassifymodel(Xtrain = X[indtrain,], cltrain = cl[indtrain], Xtest = X[indtest, ], cltest = cl[indtest])
    
    Rd file 'upclassify.Rd':
     \usage lines wider than 90 characters:
     upclassify(Xtrain, cltrain, Xtest, cltest = NULL, modelscope = NULL, tol = 10^-5, iterlim = 1000, Aitken = TRUE, reportrate = TRUE, ... ... [TRUNCATED]
    
    Rd file 'upclassifymodel.Rd':
     \usage lines wider than 90 characters:
     upclassifymodel(Xtrain, cltrain, Xtest, cltest = NULL, modelName = "EEE", tol = 10^-5, iterlim = 1000, Aitken = TRUE, reportrate = TRUE ... [TRUNCATED]
     \examples lines wider than 100 characters:
     fitup <- upclassifymodel(Xtrain = X[indtrain,], cltrain = cl[indtrain], Xtest = X[indtest, ], cltest = cl[indtest])
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in 'inst/doc':
     'manual.Rnw'
    A 'vignettes' directory will be required as from R 3.1.0
Flavor: r-oldrel-windows-ix86+x86_64