CRAN Package Check Results for Package vacem

Last updated on 2016-12-10 16:47:37.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-1 2.71 12.49 15.20 ERROR
r-devel-linux-x86_64-debian-gcc 0.1-1 0.80 12.62 13.43 ERROR
r-devel-linux-x86_64-fedora-clang 0.1-1 23.48 ERROR --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 0.1-1 21.98 ERROR --no-stop-on-test-error
r-devel-macos-x86_64-clang 0.1-1 20.92 ERROR --no-stop-on-test-error
r-devel-windows-ix86+x86_64 0.1-1 3.00 40.00 43.00 ERROR
r-patched-linux-x86_64 0.1-1 0.64 10.80 11.44 NOTE
r-patched-solaris-sparc 0.1-1 117.20 NOTE
r-patched-solaris-x86 0.1-1 26.10 NOTE
r-release-linux-x86_64 0.1-1 0.66 10.43 11.09 NOTE
r-release-osx-x86_64-mavericks 0.1-1 NOTE
r-release-windows-ix86+x86_64 0.1-1 4.00 29.00 33.00 NOTE
r-oldrel-windows-ix86+x86_64 0.1-1 5.00 27.00 32.00 NOTE

Check Details

Version: 0.1-1
Check: top-level files
Result: NOTE
    File
     LICENSE
    is not mentioned in the DESCRIPTION file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘foreach’ which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: ‘foreach’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-1
Check: R code for possible problems
Result: NOTE
    constant.post.9mo: no visible global function definition for ‘pexp’
    ll.coverage.optim.const.post.9m: no visible global function definition
     for ‘dexp’
    make.sample.pop: no visible global function definition for ‘runif’
    mcmc.converge: no visible global function definition for ‘par’
    mcmc.converge: no visible global function definition for ‘plot’
    mcmc.converge: no visible global function definition for ‘points’
    mcmc.converge: no visible global function definition for ‘density’
    mcmc.converge: no visible global function definition for ‘lines’
    mcmc.converge : <anonymous>: no visible global function definition for
     ‘sd’
    mcmc.estimate : run.chain: no visible global function definition for
     ‘dexp’
    mcmc.estimate : run.chain: no visible global function definition for
     ‘rnorm’
    mcmc.estimate : run.chain: no visible global function definition for
     ‘runif’
    mcmc.estimate : run.chain: no visible global function definition for
     ‘par’
    mcmc.estimate : run.chain: no visible global function definition for
     ‘plot’
    mcmc.estimate: no visible global function definition for ‘%dopar%’
    mcmc.estimate: no visible global function definition for ‘foreach’
    sim.n.vacc.sample.pop : <anonymous>: no visible global function
     definition for ‘runif’
    vaccinate.sample.pop: no visible global function definition for ‘runif’
    Undefined global functions or variables:
     %dopar% density dexp foreach lines par pexp plot points rnorm runif
     sd
    Consider adding
     importFrom("graphics", "lines", "par", "plot", "points")
     importFrom("stats", "density", "dexp", "pexp", "rnorm", "runif", "sd")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.1-1
Check: tests
Result: ERROR
     Running ‘coverageTest.r’ [0s/0s]
    Running the tests in ‘tests/coverageTest.r’ failed.
    Last 13 lines of output:
     > #*
     > #* $Id: coverageTest.r 378 2012-01-27 02:35:09Z ken $
     > #* ----------------------------------------------------------------------------
     >
     >
     > # TBD: Add file header
     > # TBD: Do I need some 'library( pkg )' or 'source( file )' calls here???
     >
     >
     > # source( "../tests/testUtils.r" )
     > source( getTestPaths("vacem","tests/testUtils.r") )
     Error in getTestPaths("vacem", "tests/testUtils.r") :
     could not find function ""tests/testUtils.r""
     Calls: source
     Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.1-1
Flags: --no-stop-on-test-error
Check: top-level files
Result: NOTE
    File
     LICENSE
    is not mentioned in the DESCRIPTION file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.1-1
Flags: --no-stop-on-test-error
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘foreach’ which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: ‘foreach’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.1-1
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    constant.post.9mo: no visible global function definition for ‘pexp’
    ll.coverage.optim.const.post.9m: no visible global function definition
     for ‘dexp’
    make.sample.pop: no visible global function definition for ‘runif’
    mcmc.converge: no visible global function definition for ‘par’
    mcmc.converge: no visible global function definition for ‘plot’
    mcmc.converge: no visible global function definition for ‘points’
    mcmc.converge: no visible global function definition for ‘density’
    mcmc.converge: no visible global function definition for ‘lines’
    mcmc.converge : <anonymous>: no visible global function definition for
     ‘sd’
    mcmc.estimate : run.chain: no visible global function definition for
     ‘dexp’
    mcmc.estimate : run.chain: no visible global function definition for
     ‘rnorm’
    mcmc.estimate : run.chain: no visible global function definition for
     ‘runif’
    mcmc.estimate : run.chain: no visible global function definition for
     ‘par’
    mcmc.estimate : run.chain: no visible global function definition for
     ‘plot’
    mcmc.estimate: no visible global function definition for ‘%dopar%’
    mcmc.estimate: no visible global function definition for ‘foreach’
    sim.n.vacc.sample.pop : <anonymous>: no visible global function
     definition for ‘runif’
    vaccinate.sample.pop: no visible global function definition for ‘runif’
    Undefined global functions or variables:
     %dopar% density dexp foreach lines par pexp plot points rnorm runif
     sd
    Consider adding
     importFrom("graphics", "lines", "par", "plot", "points")
     importFrom("stats", "density", "dexp", "pexp", "rnorm", "runif", "sd")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.1-1
Flags: --no-stop-on-test-error
Check: tests
Result: ERROR
     Running ‘coverageTest.r’
     Running ‘runAllTests.r’
     Running ‘testUtils.r’
    Running the tests in ‘tests/coverageTest.r’ failed.
    Last 13 lines of output:
     > #* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
     > #*
     > #* $Id: coverageTest.r 378 2012-01-27 02:35:09Z ken $
     > #* ----------------------------------------------------------------------------
     >
     >
     > # TBD: Add file header
     > # TBD: Do I need some 'library( pkg )' or 'source( file )' calls here???
     >
     >
     > # source( "../tests/testUtils.r" )
     > source( getTestPaths("vacem","tests/testUtils.r") )
     Error in source(getTestPaths("vacem", "tests/testUtils.r")) :
     could not find function "getTestPaths"
     Execution halted
    Running the tests in ‘tests/runAllTests.r’ failed.
    Last 13 lines of output:
     + } # end of function runAllTests()
     >
     > # Saw something like this in the Roxygen package's tests directory;
     > # still deciding if I need/want to use it... -- K.Cline, 1/20/2012
     > #
     > # if ( require('RUnit') ) {
     > # library( 'vacem' )
     > # runAllTests( verbose=0L )
     > # }
     >
     > runAllTests( verbose=0L )
     Paths not found for package 'vacem' -- Subdirectories '/tmp/RtmptXYASB/RLIBS_56286c4de48c/vacem/tests' do not exist; returning NULL
     Error in runAllTests(verbose = 0L) :
     Testing failed for package 'vacem' -- Unable to find testing directory 'tests'; Exiting
     Execution halted
    Running the tests in ‘tests/testUtils.r’ failed.
    Last 13 lines of output:
     > #* along with this program; if not, write to the Free Software
     > #* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
     > #*
     > #* $Id: testUtils.r 374 2012-01-26 22:28:34Z ken $
     > #* ----------------------------------------------------------------------------
     >
     >
     > # TBD: Add file header
     > # TBD: Do I need some 'library( pkg )' or 'source( file )' calls here???
     >
     > # TBD: Do I need/want this 'cat' (or 'print') here?
     > verbose <- ( getOption( "RUnit" )$verbose && TRUE )
     Error in getOption("RUnit")$verbose && TRUE :
     invalid 'x' type in 'x && y'
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1-1
Flags: --no-stop-on-test-error
Check: tests
Result: ERROR
     Running ‘coverageTest.r’
     Running ‘runAllTests.r’
     Running ‘testUtils.r’
    Running the tests in ‘tests/coverageTest.r’ failed.
    Last 13 lines of output:
     > #*
     > #* $Id: coverageTest.r 378 2012-01-27 02:35:09Z ken $
     > #* ----------------------------------------------------------------------------
     >
     >
     > # TBD: Add file header
     > # TBD: Do I need some 'library( pkg )' or 'source( file )' calls here???
     >
     >
     > # source( "../tests/testUtils.r" )
     > source( getTestPaths("vacem","tests/testUtils.r") )
     Error in getTestPaths("vacem", "tests/testUtils.r") :
     could not find function ""tests/testUtils.r""
     Calls: source
     Execution halted
    Running the tests in ‘tests/runAllTests.r’ failed.
    Last 13 lines of output:
     + } # end of function runAllTests()
     >
     > # Saw something like this in the Roxygen package's tests directory;
     > # still deciding if I need/want to use it... -- K.Cline, 1/20/2012
     > #
     > # if ( require('RUnit') ) {
     > # library( 'vacem' )
     > # runAllTests( verbose=0L )
     > # }
     >
     > runAllTests( verbose=0L )
     Paths not found for package 'vacem' -- Subdirectories '/tmp/RtmpAiH2nZ/RLIBS_a1e746aa65/vacem/tests' do not exist; returning NULL
     Error in runAllTests(verbose = 0L) :
     Testing failed for package 'vacem' -- Unable to find testing directory 'tests'; Exiting
     Execution halted
    Running the tests in ‘tests/testUtils.r’ failed.
    Last 13 lines of output:
     > #* along with this program; if not, write to the Free Software
     > #* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
     > #*
     > #* $Id: testUtils.r 374 2012-01-26 22:28:34Z ken $
     > #* ----------------------------------------------------------------------------
     >
     >
     > # TBD: Add file header
     > # TBD: Do I need some 'library( pkg )' or 'source( file )' calls here???
     >
     > # TBD: Do I need/want this 'cat' (or 'print') here?
     > verbose <- ( getOption( "RUnit" )$verbose && TRUE )
     Error in getOption("RUnit")$verbose && TRUE :
     invalid 'x' type in 'x && y'
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.1-1
Flags: --no-stop-on-test-error
Check: tests
Result: ERROR
     Running ‘coverageTest.r’
     Running ‘runAllTests.r’
     Running ‘testUtils.r’
    Running the tests in ‘tests/coverageTest.r’ failed.
    Last 13 lines of output:
     > #*
     > #* $Id: coverageTest.r 378 2012-01-27 02:35:09Z ken $
     > #* ----------------------------------------------------------------------------
     >
     >
     > # TBD: Add file header
     > # TBD: Do I need some 'library( pkg )' or 'source( file )' calls here???
     >
     >
     > # source( "../tests/testUtils.r" )
     > source( getTestPaths("vacem","tests/testUtils.r") )
     Error in getTestPaths("vacem", "tests/testUtils.r") :
     could not find function ""tests/testUtils.r""
     Calls: source
     Execution halted
    Running the tests in ‘tests/runAllTests.r’ failed.
    Last 13 lines of output:
     + } # end of function runAllTests()
     >
     > # Saw something like this in the Roxygen package's tests directory;
     > # still deciding if I need/want to use it... -- K.Cline, 1/20/2012
     > #
     > # if ( require('RUnit') ) {
     > # library( 'vacem' )
     > # runAllTests( verbose=0L )
     > # }
     >
     > runAllTests( verbose=0L )
     Paths not found for package 'vacem' -- Subdirectories '/private/var/folders/gv/f60jb6tn7fxb9sz1yfr7d_vm0000gp/T/Rtmp7u5rhw/RLIBS_d206367ecf99/vacem/tests' do not exist; returning NULL
     Error in runAllTests(verbose = 0L) :
     Testing failed for package 'vacem' -- Unable to find testing directory 'tests'; Exiting
     Execution halted
    Running the tests in ‘tests/testUtils.r’ failed.
    Last 13 lines of output:
     > #* along with this program; if not, write to the Free Software
     > #* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
     > #*
     > #* $Id: testUtils.r 374 2012-01-26 22:28:34Z ken $
     > #* ----------------------------------------------------------------------------
     >
     >
     > # TBD: Add file header
     > # TBD: Do I need some 'library( pkg )' or 'source( file )' calls here???
     >
     > # TBD: Do I need/want this 'cat' (or 'print') here?
     > verbose <- ( getOption( "RUnit" )$verbose && TRUE )
     Error in getOption("RUnit")$verbose && TRUE :
     invalid 'x' type in 'x && y'
     Execution halted
Flavor: r-devel-macos-x86_64-clang

Version: 0.1-1
Check: tests
Result: ERROR
     Running 'coverageTest.r' [0s]
    Running the tests in 'tests/coverageTest.r' failed.
    Last 13 lines of output:
     > #*
     > #* $Id: coverageTest.r 378 2012-01-27 02:35:09Z ken $
     > #* ----------------------------------------------------------------------------
     >
     >
     > # TBD: Add file header
     > # TBD: Do I need some 'library( pkg )' or 'source( file )' calls here???
     >
     >
     > # source( "../tests/testUtils.r" )
     > source( getTestPaths("vacem","tests/testUtils.r") )
     Error in getTestPaths("vacem", "tests/testUtils.r") :
     could not find function ""tests/testUtils.r""
     Calls: source
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.1-1
Check: R code for possible problems
Result: NOTE
    mcmc.estimate: no visible global function definition for '%dopar%'
    mcmc.estimate: no visible global function definition for 'foreach'
Flavor: r-oldrel-windows-ix86+x86_64