CRAN Package Check Results for Package varbvs

Last updated on 2015-07-03 23:47:59.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.09 8.57 9.66 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.01 9.72 10.74 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 19.87 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 18.53 NOTE
r-devel-osx-x86_64-clang 1.0 18.91 NOTE
r-devel-windows-ix86+x86_64 1.0 18.00 21.00 39.00 NOTE
r-patched-linux-x86_64 1.0 1.06 10.41 11.47 NOTE
r-patched-solaris-sparc 1.0 125.10 NOTE
r-patched-solaris-x86 1.0 30.20 NOTE
r-release-linux-x86_64 1.0 1.16 10.21 11.37 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 13.00 25.00 38.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 10.00 38.00 48.00 NOTE

Check Details

Version: 1.0
Check: foreign function calls
Result: NOTE
    Calls with DUP:
     .C("varbvsbinupdateR", n = as.integer(n), m = as.integer(m),
     X = X, sa = as.double(sa), logodds = as.double(logodds),
     u = as.double(stats$u), xy = as.double(stats$xy), xu = as.double(stats$xu),
     d = as.double(stats$d), alpha = as.double(alpha0), mu = as.double(mu0),
     Xr = as.double(Xr0), S = as.integer(S - 1), DUP = FALSE)
     .C("varbvsupdateR", n = as.integer(n), m = as.integer(m), X = X,
     sigma = as.double(sigma), sa = as.double(sa), logodds = as.double(logodds),
     xy = as.double(xy), d = as.double(d), alpha = as.double(alpha0),
     mu = as.double(mu0), Xr = as.double(Xr0), S = as.integer(S -
     1), DUP = FALSE)
    DUP is no longer supported and will be ignored.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    create.data: no visible global function definition for ‘rnorm’
    create.snps: no visible global function definition for ‘rnorm’
    create.snps: no visible global function definition for ‘runif’
    varbvsbinoptimize: no visible global function definition for ‘runif’
    varbvsbinoptimize: no visible global function definition for ‘rnorm’
    varbvsoptimize: no visible global function definition for ‘runif’
    varbvsoptimize: no visible global function definition for ‘rnorm’
    varsimbvs: no visible binding for global variable ‘sd’
    varsimbvs: no visible global function definition for ‘runif’
    varsimbvs: no visible global function definition for ‘rnorm’
    varsimbvs: no visible global function definition for ‘dbeta’
    Undefined global functions or variables:
     dbeta rnorm runif sd
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.0
Check: foreign function calls
Result: NOTE
    Calls with DUP != TRUE:
     .C("varbvsbinupdateR", n = as.integer(n), m = as.integer(m),
     X = X, sa = as.double(sa), logodds = as.double(logodds),
     u = as.double(stats$u), xy = as.double(stats$xy), xu = as.double(stats$xu),
     d = as.double(stats$d), alpha = as.double(alpha0), mu = as.double(mu0),
     Xr = as.double(Xr0), S = as.integer(S - 1), DUP = FALSE)
     .C("varbvsupdateR", n = as.integer(n), m = as.integer(m), X = X,
     sigma = as.double(sigma), sa = as.double(sa), logodds = as.double(logodds),
     xy = as.double(xy), d = as.double(d), alpha = as.double(alpha0),
     mu = as.double(mu0), Xr = as.double(Xr0), S = as.integer(S -
     1), DUP = FALSE)
    DUP = FALSE is deprecated and will be disabled in future versions of R.
Flavor: r-oldrel-windows-ix86+x86_64