CRAN Package Check Results for Package vcdExtra

Last updated on 2014-04-25 09:52:26.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.6-0 5.09 95.94 101.03 OK
r-devel-linux-x86_64-debian-gcc 0.6-0 5.16 94.57 99.74 OK
r-devel-linux-x86_64-fedora-clang 0.6-0 225.87 OK
r-devel-linux-x86_64-fedora-gcc 0.6-0 221.36 OK
r-devel-osx-x86_64-clang 0.6-0 184.17 OK
r-devel-osx-x86_64-gcc 0.6-0 ERROR
r-devel-windows-ix86+x86_64 0.6-0 13.00 122.00 135.00 OK
r-patched-linux-x86_64 0.6-0 4.86 95.76 100.63 OK
r-patched-solaris-sparc 0.6-0 1137.30 OK
r-patched-solaris-x86 0.6-0 290.80 OK
r-release-linux-ix86 0.6-0 8.00 152.00 160.00 OK
r-release-linux-x86_64 0.6-0 5.07 95.10 100.17 OK
r-release-osx-x86_64-mavericks 0.6-0 WARN
r-release-osx-x86_64-snowleopard 0.6-0 OK
r-release-windows-ix86+x86_64 0.6-0 13.00 137.00 150.00 OK
r-oldrel-windows-ix86+x86_64 0.6-0 16.00 132.00 148.00 OK

Check Details

Version: 0.6-0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘lmtest’ ‘ggplot2’ ‘car’
Flavor: r-devel-osx-x86_64-gcc

Version: 0.6-0
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘alr3’, ‘Hmisc’, ‘lmtest’
Flavor: r-devel-osx-x86_64-gcc

Version: 0.6-0
Check: examples
Result: ERROR
    Running examples in ‘vcdExtra-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: Accident
    > ### Title: Traffic Accident Victims in France in 1958
    > ### Aliases: Accident
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > # examples
    > data(Accident)
    > head(Accident)
     age result mode gender Freq
    1 50+ Died Pedestrian Male 704
    2 50+ Died Pedestrian Female 378
    3 50+ Died Bicycle Male 396
    4 50+ Died Bicycle Female 56
    5 50+ Died Motorcycle Male 742
    6 50+ Died Motorcycle Female 78
    >
    > # for graphs, reorder mode
    > Accident$mode <- ordered(Accident$mode,
    + levels=levels(Accident$mode)[c(4,2,3,1)])
    >
    > # Bertin's table
    > accident_tab <- xtabs(Freq ~ gender+mode+age+result, data=Accident)
    > structable(mode+gender ~ age+result, data=accident_tab)
     mode Pedestrian Bicycle Motorcycle 4-Wheeled
     gender Female Male Female Male Female Male Female Male
    age result
    0-9 Died 89 150 5 26 6 6 65 70
     Injured 1967 3341 126 378 131 181 1362 1593
    10-19 Died 28 70 31 76 54 362 61 150
     Injured 1495 1827 7218 3407 3587 12311 2593 3543
    20-29 Died 24 78 10 55 82 660 107 353
     Injured 864 1521 609 1565 4010 18558 4361 9084
    30-49 Died 49 223 24 146 98 889 199 720
     Injured 1814 3178 1118 3024 3664 18909 7712 15086
    50+ Died 378 704 56 396 78 742 253 513
     Injured 5449 5206 1030 3863 1387 8597 5552 7423
    >
    > ## Loglinear models
    > ## ----------------
    >
    > # mutual independence
    > acc.mod0 <- glm(Freq ~ age+result+mode+gender, data=Accident, family=poisson)
    > summarise(acc.mod0)
    Model Summary:
     LR Chisq Df Pr(>Chisq) AIC BIC
    acc.mod0 60320 70 0 60180 59470
    > mosaic(acc.mod0, ~mode+age+gender+result)
    >
    > # result as a response
    > acc.mod1 <- glm(Freq ~ age*mode*gender + result, data=Accident, family=poisson)
    > summarise(acc.mod1)
    Model Summary:
     LR Chisq Df Pr(>Chisq) AIC BIC
    acc.mod1 2217.7 39 0 2139.7 1744.4
    > mosaic(acc.mod1, ~mode+age+gender+result,
    + labeling_args = list(abbreviate = c(gender=1, result=4)))
    >
    > # allow two-way association of result with each explanatory variable
    > acc.mod2 <- glm(Freq ~ age*mode*gender + result*(age+mode+gender), data=Accident, family=poisson)
    > summarise(acc.mod2)
    Model Summary:
     LR Chisq Df Pr(>Chisq) AIC BIC
    acc.mod2 227.47 31 8.9212e-32 165.47 -148.79
    > mosaic(acc.mod2, ~mode+age+gender+result,
    + labeling_args = list(abbreviate = c(gender=1, result=4)))
    >
    > acc.mods <- glmlist(acc.mod0, acc.mod1, acc.mod2)
    > summarise(acc.mods)
    Model Summary:
     LR Chisq Df Pr(>Chisq) AIC BIC
    acc.mod0 60320 70 0.0000e+00 60180 59470
    acc.mod1 2218 39 0.0000e+00 2140 1744
    acc.mod2 227 31 8.9212e-32 165 -149
    >
    > ## Binomial (logistic regression) models for result
    > ## ------------------------------------------------
    > library(car) # for Anova()
    Error in library(car) : there is no package called ‘car’
    Execution halted
Flavor: r-devel-osx-x86_64-gcc

Version: 0.6-0
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    377d6bb7/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks