CRAN Package Check Results for Package vegan

Last updated on 2014-04-25 05:47:28.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0-10 5.95 130.48 136.43 NOTE
r-devel-linux-x86_64-debian-gcc 2.0-10 6.13 131.32 137.44 NOTE
r-devel-linux-x86_64-fedora-clang 2.0-10 283.69 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0-10 272.70 OK
r-devel-osx-x86_64-clang 2.0-10 227.57 NOTE
r-devel-osx-x86_64-gcc 2.0-10 ERROR
r-devel-windows-ix86+x86_64 2.0-10 19.00 216.00 235.00 OK
r-patched-linux-x86_64 2.0-10 6.14 130.58 136.72 NOTE
r-patched-solaris-sparc 2.0-10 1404.00 OK --no-build-vignettes
r-patched-solaris-x86 2.0-10 326.90 OK
r-release-linux-ix86 2.0-10 10.00 201.00 211.00 NOTE
r-release-linux-x86_64 2.0-10 6.14 132.91 139.05 NOTE
r-release-osx-x86_64-mavericks 2.0-10 WARN
r-release-osx-x86_64-snowleopard 2.0-10 NOTE
r-release-windows-ix86+x86_64 2.0-10 21.00 229.00 250.00 OK
r-oldrel-windows-ix86+x86_64 2.0-10 21.00 226.00 247.00 OK

Check Details

Version: 2.0-10
Check: R code for possible problems
Result: NOTE
    Found the following assignments to the global environment:
    File ‘vegan/R/orditkplot.R’:
     assign(dumpName, xy, envir = .GlobalEnv)
     assign(dumpName, xy, envir = .GlobalEnv)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 2.0-10
Check: package dependencies
Result: ERROR
    Package required but not available: ‘permute’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-gcc

Version: 2.0-10
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘bipartite’, ‘maptools’
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0-10
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    (/usr/local/texlive/2013basic/texmf-dist/tex/latex/amsfonts/amssymb.sty
    (/usr/local/texlive/2013basic/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
    
    ! LaTeX Error: File `ucs.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    Enter file name:
    /Builds/CRAN-QA-Simon/packages/mavericks-x86_64/results/3.1/vegan.Rcheck/vign_t
    est/vegan/vignettes/vegan.sty:11: Emergency stop.
    <read *>
    
    l.11 \usepackage
     [utf8x]{inputenc}^^M
    /Builds/CRAN-QA-Simon/packages/mavericks-x86_64/results/3.1/vegan.Rcheck/vign_t
    est/vegan/vignettes/vegan.sty:11: ==> Fatal error occurred, no output PDF file
     produced!
    Transcript written on decision-vegan.log.
    /usr/bin/texi2dvi: pdflatex exited with bad status, quitting.
    /usr/bin/texi2dvi: see decision-vegan.log for errors.
    make: *** [decision-vegan.pdf] Error 1
    Error in buildVignettes(dir = "/Builds/CRAN-QA-Simon/packages/mavericks-x86_64/results/3.1/vegan.Rcheck/vign_test/vegan") :
     running 'make' failed
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0-10
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    199fb0/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0-10
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: 'smacof'
Flavor: r-release-osx-x86_64-snowleopard

Version: 2.0-10
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    (/usr/local/texlive/2012basic/texmf-dist/tex/latex/amsfonts/amssymb.sty
    (/usr/local/texlive/2012basic/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
    
    ! LaTeX Error: File `ucs.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    Enter file name:
    /Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/snowleopard-x86_64/results/3.1/
    vegan.Rcheck/vign_test/vegan/vignettes/vegan.sty:11: Emergency stop.
    <read *>
    
    l.11 \usepackage
     [utf8x]{inputenc}^^M
    /Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/snowleopard-x86_64/results/3.1/
    vegan.Rcheck/vign_test/vegan/vignettes/vegan.sty:11: ==> Fatal error occurred,
     no output PDF file produced!
    Transcript written on decision-vegan.log.
    /usr/bin/texi2dvi: pdflatex exited with bad status, quitting.
    /usr/bin/texi2dvi: see decision-vegan.log for errors.
    make: *** [decision-vegan.pdf] Error 1
    Error in buildVignettes(dir = "/Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/snowleopard-x86_64/results/3.1/vegan.Rcheck/vign_test/vegan") :
     running 'make' failed
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard