CRAN Package Check Results for Package vegetarian

Last updated on 2014-11-26 05:48:01.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 0.65 15.56 16.21 NOTE
r-devel-linux-x86_64-debian-gcc 1.2 0.62 15.08 15.69 NOTE
r-devel-linux-x86_64-fedora-clang 1.2 33.89 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2 31.78 NOTE
r-devel-osx-x86_64-clang 1.2 33.44 NOTE
r-devel-windows-ix86+x86_64 1.2 3.00 26.00 29.00 NOTE
r-patched-linux-x86_64 1.2 0.65 15.47 16.12 NOTE
r-patched-solaris-sparc 1.2 205.10 NOTE
r-patched-solaris-x86 1.2 44.20 NOTE
r-release-linux-ix86 1.2 0.99 21.51 22.50 NOTE
r-release-linux-x86_64 1.2 0.65 15.83 16.48 NOTE
r-release-osx-x86_64-mavericks 1.2 NOTE
r-release-windows-ix86+x86_64 1.2 2.00 33.00 35.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2 2.00 27.00 29.00 NOTE

Check Details

Version: 1.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘stats’ which was already attached by Depends.
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    H: warning in do.call(what = bootstrap, arg = c(abundances =
     list(abundances), func = H, func.arg = list(func.arg), boot.arg)):
     partial argument match of ‘arg’ to ‘args’
    M.homog: warning in do.call(what = bootstrap, arg = c(abundances =
     list(abundances), func = M.homog, func.arg = list(func.arg),
     boot.arg)): partial argument match of ‘arg’ to ‘args’
    Rel.homog: warning in do.call(what = bootstrap, arg = c(abundances =
     list(abundances), func = Rel.homog, func.arg = list(func.arg),
     boot.arg)): partial argument match of ‘arg’ to ‘args’
    bootstrap: warning in do.call(what = func, arg = list(boots[, , i])):
     partial argument match of ‘arg’ to ‘args’
    bootstrap: warning in do.call(what = func, arg = c(abundances =
     list(boots[, , i]), func.arg)): partial argument match of ‘arg’ to
     ‘args’
    d: warning in do.call(what = bootstrap, arg = c(abundances =
     list(abundances), func = d, func.arg = list(func.arg), boot.arg)):
     partial argument match of ‘arg’ to ‘args’
    sim.groups: warning in do.call(what = bootstrap, arg = c(abundances =
     list(rbind(scores[i, ], scores[j, ])), func = similarity, func.arg =
     list(func.arg), boot.arg)): partial argument match of ‘arg’ to ‘args’
    sim.table: warning in do.call(what = bootstrap, arg = c(abundances =
     list(rbind(scores[i, ], scores[j, ])), func = similarity, func.arg =
     list(func.arg), boot.arg)): partial argument match of ‘arg’ to ‘args’
    similarity: warning in do.call(what = bootstrap, arg = c(abundances =
     list(abundances), func = similarity, func.arg = list(func.arg),
     boot.arg)): partial argument match of ‘arg’ to ‘args’
    turnover: warning in do.call(what = bootstrap, arg = c(abundances =
     list(abundances), func = turnover, func.arg = list(func.arg),
     boot.arg)): partial argument match of ‘arg’ to ‘args’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: Rd files
Result: NOTE
    prepare_Rd: H.Rd:41-42: Dropping empty section \note
    prepare_Rd: M.homog.Rd:19-21: Dropping empty section \details
    prepare_Rd: M.homog.Rd:35-36: Dropping empty section \note
    prepare_Rd: Rel.homog.Rd:24-25: Dropping empty section \note
    prepare_Rd: bootstrap.Rd:34: Dropping empty section \note
    prepare_Rd: d.Rd:35-36: Dropping empty section \note
    prepare_Rd: normalize.rows.Rd:26-27: Dropping empty section \note
    prepare_Rd: p.q.sum.Rd:23-24: Dropping empty section \note
    prepare_Rd: p.q.sum.Rd:26: Dropping empty section \examples
    prepare_Rd: sim.groups.Rd:27-28: Dropping empty section \note
    prepare_Rd: sim.table.Rd:25-26: Dropping empty section \note
    prepare_Rd: similarity.Rd:25-26: Dropping empty section \note
    prepare_Rd: turnover.Rd:17-18: Dropping empty section \details
    prepare_Rd: turnover.Rd:29-30: Dropping empty section \note
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: Rd line widths
Result: NOTE
    Rd file 'H.Rd':
     \usage lines wider than 90 characters:
     H(abundances, lev = "alpha", wts = FALSE, q = 1, HCDT = FALSE, gini = FALSE, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 1 ... [TRUNCATED]
     \examples lines wider than 100 characters:
     simesants_freq<-normalize.rows(simesants[,-1])#not a necessary step, but just to show what you would do if your data were in the form o ... [TRUNCATED]
    
    Rd file 'M.homog.Rd':
     \usage lines wider than 90 characters:
     M.homog(abundances, abundances2 = NULL, q = 1, std = FALSE, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
    
    Rd file 'Rel.homog.Rd':
     \usage lines wider than 90 characters:
     Rel.homog(abundances, abundances2 = NULL, wts = FALSE, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
    
    Rd file 'bootstrap.Rd':
     \usage lines wider than 90 characters:
     bootstrap(abundances, s.sizes = NULL, num.iter = 100, func, func.arg = "blank", sim.pop = FALSE, sim.par = FALSE)
     \examples lines wider than 100 characters:
     simesants_freq<-normalize.rows(simesants[,-1])#not a necessary step, but just to show what you would do if your data were in the form o ... [TRUNCATED]
    
    Rd file 'd.Rd':
     \usage lines wider than 90 characters:
     d(abundances, lev = "alpha", wts = FALSE, q = 1, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
     \examples lines wider than 100 characters:
     simesants_freq<-normalize.rows(simesants[,-1])#not a necessary step, but just to show what you would do if your data were in the form o ... [TRUNCATED]
    
    Rd file 'sim.groups.Rd':
     \usage lines wider than 90 characters:
     sim.groups(abundances1, abundances2, q = 1, labels = FALSE, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
     \examples lines wider than 100 characters:
     sim.groups(simesants[1:3,-1],simesants[4:5,-1],labels=TRUE,boot=TRUE,boot.arg=list(num.iter=200))#gives standard errors only
    
    Rd file 'sim.table.Rd':
     \usage lines wider than 90 characters:
     sim.table(abundances, q = 1, labels = FALSE, half = TRUE, diag = TRUE, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
    
    Rd file 'similarity.Rd':
     \usage lines wider than 90 characters:
     similarity(abundances, abundances2 = NULL, q = 1, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
    
    Rd file 'turnover.Rd':
     \usage lines wider than 90 characters:
     turnover(abundances, abundances2 = NULL, q = 1, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64