CRAN Package Check Results for Package xpose4

Last updated on 2015-08-28 10:49:26.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 4.5.3 4.18 89.83 94.00 NOTE
r-devel-linux-x86_64-debian-gcc 4.5.3 3.82 89.86 93.68 NOTE
r-devel-linux-x86_64-fedora-clang 4.5.3 144.37 NOTE
r-devel-linux-x86_64-fedora-gcc 4.5.3 127.05 NOTE
r-devel-osx-x86_64-clang 4.5.3 103.27 NOTE
r-devel-windows-ix86+x86_64 4.5.3 29.00 142.00 171.00 NOTE
r-patched-linux-x86_64 4.5.3 3.95 90.42 94.37 NOTE
r-patched-solaris-sparc 4.5.3 1155.30 NOTE
r-patched-solaris-x86 4.5.3 219.60 NOTE
r-release-linux-x86_64 4.5.3 3.95 90.23 94.18 NOTE
r-release-osx-x86_64-mavericks 4.5.3 OK
r-release-windows-ix86+x86_64 4.5.3 24.00 156.00 180.00 OK
r-oldrel-windows-ix86+x86_64 4.5.3 31.00 210.00 241.00 OK

Check Details

Version: 4.5.3
Check: whether the namespace can be loaded with stated dependencies
Result: NOTE
    Warning: class "NULL" is defined (with package slot ‘methods’) but no metadata object found to revise superClass information---not exported? Making a copy in package ‘.GlobalEnv’
    Warning: subclass ".NULL" of class "NULL" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: class "character" is defined (with package slot ‘methods’) but no metadata object found to revise superClass information---not exported? Making a copy in package ‘.GlobalEnv’
    Warning: subclass "signature" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "className" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "ObjectsWithPackage" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "signature" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "className" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "ObjectsWithPackage" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: class "numeric" is defined (with package slot ‘methods’) but no metadata object found to revise superClass information---not exported? Making a copy in package ‘.GlobalEnv’
    Warning: subclass "integer" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "factor" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass ".NULL" of class "NULL" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "integer" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "factor" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass ".NULL" of class "NULL" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: class "data.frame" is defined (with package slot ‘methods’) but no metadata object found to revise superClass information---not exported? Making a copy in package ‘.GlobalEnv’
    Warning: subclass ".NULL" of class "NULL" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: class "list" is defined (with package slot ‘methods’) but no metadata object found to revise superClass information---not exported? Making a copy in package ‘.GlobalEnv’
    Warning: subclass "namedList" of class "list" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "listOfMethods" of class "list" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: class "vector" is defined (with package slot ‘methods’) but no metadata object found to revise superClass information---not exported? Making a copy in package ‘.GlobalEnv’
    Warning: subclass "logical" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "complex" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "integer" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "raw" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "expression" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "structure" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "array" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "matrix" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "signature" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "className" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "ObjectsWithPackage" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "ts" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "mts" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "factor" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "namedList" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "listOfMethods" of class "vector" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "integer" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "factor" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "namedList" of class "list" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "listOfMethods" of class "list" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: class "logical" is defined (with package slot ‘methods’) but no metadata object found to revise superClass information---not exported? Making a copy in package ‘.GlobalEnv’
    Warning: subclass "integer" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    Warning: subclass "factor" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
    
    A namespace must be able to be loaded with just the base namespace
    loaded: otherwise if the namespace gets loaded by a saved object, the
    session will be unable to start.
    
    Probably some imports need to be declared in the NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 4.5.3
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     print.xpose.multiple.plot
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 4.5.3
Check: R code for possible problems
Result: NOTE
    add.modify.db.items.menu: no visible global function definition for
     ‘menu’
    addid: no visible global function definition for ‘residuals’
    addid: no visible global function definition for ‘loess’
    another.menu: no visible global function definition for ‘menu’
    another.menu: no visible global function definition for ‘dev.cur’
    another.menu: no visible global function definition for ‘dev.off’
    boot.hist: no visible global function definition for ‘read.csv’
    bootgam.menu: no visible global function definition for ‘menu’
    bootgam.plot.menu: no visible global function definition for ‘menu’
    bootgam.print: no visible global function definition for ‘tail’
    bootgam.settings.menu: no visible global function definition for ‘menu’
    bootscm.import: no visible global function definition for ‘read.csv’
    bootscm.menu: no visible global function definition for ‘menu’
    bootscm.plot.menu: no visible global function definition for ‘menu’
    cat.dv.vs.idv.sb: no visible global function definition for ‘formula’
    cat.pc: no visible global function definition for ‘quantile’
    cat.pc: no visible global function definition for ‘formula’
    change.cat.cont: no visible binding for global variable ‘data’
    change.cat.levels: no visible binding for global variable ‘data’
    change.conv.alg: no visible global function definition for ‘menu’
    change.dv.cat.levels: no visible binding for global variable ‘data’
    change.graphical.par: no visible global function definition for ‘menu’
    change.xlabel: no visible binding for global variable ‘data’
    change.xvardef: no visible binding for global variable ‘data’
    compute.cwres: no visible global function definition for
     ‘installed.packages’
    compute.cwres: no visible global function definition for ‘write.table’
    computePI : <anonymous>: no visible global function definition for
     ‘quantile’
    computePI : <anonymous>: no visible global function definition for
     ‘median’
    continuous.table: no visible global function definition for ‘sd’
    covariate.model.menu: no visible global function definition for ‘menu’
    create.strat.rand: no visible global function definition for
     ‘residuals’
    create.strat.rand: no visible global function definition for ‘loess’
    create.strat.rand: no visible global function definition for ‘formula’
    create.strat.rand: no visible global function definition for ‘quantile’
    cwres.menu: no visible global function definition for ‘menu’
    data.checkout: no visible global function definition for ‘read.csv’
    data.checkout: no visible global function definition for ‘read.table’
    data.checkout.menu: no visible global function definition for ‘menu’
    documentation.menu: no visible global function definition for ‘menu’
    gam.menu: no visible global function definition for ‘menu’
    gam.settings.menu: no visible global function definition for ‘menu’
    get.cov.stats: no visible global function definition for ‘sd’
    gof: no visible global function definition for ‘dev.off’
    gof.menu: no visible global function definition for ‘menu’
    gofSetup: no visible global function definition for ‘png’
    gofSetup: no visible global function definition for ‘pdf’
    import.graph.par: no visible binding for global variable ‘data’
    kaplan.plot: no visible global function definition for ‘read.table’
    kaplan.plot: no visible global function definition for ‘quantile’
    kaplan.plot: no visible global function definition for ‘tail’
    main.menu: no visible global function definition for ‘menu’
    manage.db: no visible global function definition for ‘menu’
    model.comparison.covariates.menu: no visible global function definition
     for ‘menu’
    model.comparison.menu: no visible global function definition for ‘menu’
    npc.coverage : myPanel: no visible global function definition for ‘lm’
    npc.coverage: no visible global function definition for ‘reshape’
    parameters.menu: no visible global function definition for ‘menu’
    parm.summary: no visible global function definition for ‘write.table’
    preferences.menu: no visible global function definition for ‘menu’
    randtest.hist: no visible global function definition for ‘qchisq’
    randtest.hist: no visible global function definition for ‘read.csv’
    randtest.hist: no visible global function definition for ‘quantile’
    read.TTE.sim.data: no visible global function definition for
     ‘read.table’
    read.bootscm.par.est: no visible global function definition for
     ‘read.csv’
    read.bootscm.par.est : sd.na: no visible global function definition for
     ‘sd’
    read.bootscm.par.est : rse.na: no visible global function definition
     for ‘sd’
    read.bootscm.par.est : create.bias.table: no visible global function
     definition for ‘aggregate’
    read.cwres.data: no visible global function definition for
     ‘count.fields’
    read.cwres.data: no visible global function definition for ‘read.table’
    read.cwres.data: no visible global function definition for
     ‘write.table’
    read.lst7: no visible global function definition for ‘read.table’
    read.nm.tables: no visible global function definition for
     ‘count.fields’
    read.nm.tables: no visible global function definition for ‘write.table’
    read.nm.tables: no visible global function definition for ‘read.table’
    read.npc.vpc.results: no visible global function definition for
     ‘read.table’
    read.phi: no visible global function definition for ‘count.fields’
    read.phi: no visible global function definition for ‘write.table’
    read.phi: no visible global function definition for ‘read.table’
    read.vpctab: no visible global function definition for ‘read.table’
    reset.graph.par: no visible binding for global variable ‘data’
    residual.diagnostics.menu: no visible global function definition for
     ‘menu’
    runsum: no visible global function definition for ‘par’
    runsum.print: no visible global function definition for ‘dev.new’
    set.doc: no visible binding for global variable ‘data’
    struct.gof.menu: no visible global function definition for ‘menu’
    structural.diagnostics.menu: no visible global function definition for
     ‘menu’
    vpc.npc.menu: no visible global function definition for ‘menu’
    xp.akaike.plot: no visible global function definition for ‘reorder’
    xp.boot.par.est: no visible global function definition for ‘rgb’
    xp.boot.par.est.corr: no visible global function definition for ‘rgb’
    xp.cook: no visible global function definition for ‘summary.glm’
    xp.cook: no visible global function definition for ‘lm.influence’
    xp.get.disp: no visible global function definition for ‘as.formula’
    xp.get.disp: no visible global function definition for ‘anova’
    xp.get.disp: no visible global function definition for ‘quasi’
    xp.inc.prob.comb.2: no visible global function definition for ‘head’
    xp.inc.stab.cov: no visible global function definition for ‘reshape’
    xp.incl.index.cov: no visible global function definition for ‘tail’
    xp.ind.inf.fit: no visible global function definition for ‘residuals’
    xp.ind.inf.fit: no visible global function definition for
     ‘lm.influence’
    xp.ind.inf.terms: no visible global function definition for
     ‘coefficients’
    xp.ind.inf.terms: no visible global function definition for ‘dfbetas’
    xp.ind.stud.res: no visible global function definition for ‘residuals’
    xp.ind.stud.res: no visible global function definition for
     ‘lm.influence’
    xp.ind.stud.res: no visible global function definition for ‘reorder’
    xp.plot: no visible global function definition for ‘preplot’
    xp.plot: no visible global function definition for ‘predict’
    xp.plot: no visible global function definition for ‘residuals’
    xp.summary: no visible global function definition for ‘coefficients’
    xpPage: no visible global function definition for ‘dev.cur’
    xpose.VPC.categorical: no visible global function definition for
     ‘formula’
    xpose.bootgam: no visible global function definition for
     ‘txtProgressBar’
    xpose.bootgam: no visible global function definition for
     ‘setTxtProgressBar’
    xpose.bootgam: no visible global function definition for
     ‘capture.output’
    xpose.dev.new: no visible global function definition for ‘dev.new’
    xpose.dev.new: no visible binding for global variable ‘pdf’
    xpose.dev.new: no visible binding for global variable ‘postscript’
    xpose.dev.new: no visible binding for global variable ‘png’
    xpose.dev.new: no visible binding for global variable ‘jpeg’
    xpose.dev.new: no visible binding for global variable ‘bmp’
    xpose.dev.new: no visible binding for global variable ‘tiff’
    xpose.gam: no visible global function definition for ‘median’
    xpose.gam: no visible global function definition for ‘as.formula’
    xpose.gam: no visible global function definition for ‘packageVersion’
    xpose.license.citation: no visible global function definition for
     ‘citation’
    xpose.multiple.plot.default: no visible global function definition for
     ‘dev.cur’
    xpose.multiple.plot.default: no visible global function definition for
     ‘dev.off’
    xpose.multiple.plot.default: no visible global function definition for
     ‘update’
    xpose.panel.default: no visible global function definition for ‘lm’
    xpose.panel.histogram: no visible binding for global variable ‘dnorm’
    xpose.panel.histogram: no visible global function definition for
     ‘quantile’
    xpose.panel.splom: no visible binding for global variable ‘median’
    xpose.panel.splom: no visible global function definition for ‘lm’
    xpose.plot.bw: no visible global function definition for ‘reorder’
    xpose.plot.bw: no visible global function definition for ‘formula’
    xpose.plot.default: no visible global function definition for ‘reorder’
    xpose.plot.default: no visible global function definition for ‘formula’
    xpose.plot.histogram: no visible global function definition for
     ‘reorder’
    xpose.plot.histogram: no visible global function definition for
     ‘formula’
    xpose.plot.histogram : <anonymous>: no visible global function
     definition for ‘hist’
    xpose.plot.histogram : <anonymous>: no visible global function
     definition for ‘density’
    xpose.plot.qq: no visible global function definition for ‘reorder’
    xpose.plot.qq: no visible global function definition for ‘formula’
    xpose.plot.splom: no visible global function definition for ‘reorder’
    xpose.plot.splom: no visible global function definition for ‘formula’
    xpose.read: no visible global function definition for ‘read.table’
    xpose.write: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     aggregate anova as.formula bmp capture.output citation coefficients
     count.fields data density dev.cur dev.new dev.off dfbetas dnorm
     formula head hist installed.packages jpeg lm lm.influence loess
     median menu packageVersion par pdf png postscript predict preplot
     qchisq quantile quasi read.csv read.table reorder reshape residuals
     rgb sd setTxtProgressBar summary.glm tail tiff txtProgressBar update
     write.table
    Consider adding
     importFrom("grDevices", "bmp", "dev.cur", "dev.new", "dev.off", "jpeg",
     "pdf", "png", "postscript", "rgb", "tiff")
     importFrom("graphics", "hist", "par")
     importFrom("stats", "aggregate", "anova", "as.formula", "coefficients",
     "density", "dfbetas", "dnorm", "formula", "lm",
     "lm.influence", "loess", "median", "predict", "preplot",
     "qchisq", "quantile", "quasi", "reorder", "reshape",
     "residuals", "sd", "summary.glm", "update")
     importFrom("utils", "capture.output", "citation", "count.fields",
     "data", "head", "installed.packages", "menu",
     "packageVersion", "read.csv", "read.table",
     "setTxtProgressBar", "tail", "txtProgressBar",
     "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64