Last updated on 2018-04-26 10:47:34 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 1.19 | 16.10 | 17.29 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 1.18 | 15.08 | 16.26 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1 | 24.89 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1 | 23.51 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.1 | 4.00 | 31.00 | 35.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1 | 1.76 | 18.48 | 20.24 | ERROR | |
| r-patched-solaris-x86 | 1.1 | 40.70 | NOTE | |||
| r-release-linux-x86_64 | 1.1 | 1.14 | 18.50 | 19.64 | ERROR | |
| r-release-windows-ix86+x86_64 | 1.1 | 4.00 | 31.00 | 35.00 | NOTE | |
| r-release-osx-x86_64 | 1.1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1 | 2.00 | 30.00 | 32.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.1 | NOTE |
Version: 1.1
Check: top-level files
Result: NOTE
Non-standard file/directory found at top level:
‘CONTRIBUTORS’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1
Check: S3 generic/method consistency
Result: NOTE
Found the following apparent S3 methods exported but not registered:
plot.cca print.F.test.cca print.cca print.summary.cca summary.cca
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.1
Check: R code for possible problems
Result: NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File ‘yacca/R/zzz.R’:
.First.lib calls:
cat(paste("'", ehelp[4], "'\n", "Version ", ehelp[2], " created on ", ehelp[3], ".\n", sep = ""))
cat(paste(substring(ehelp[3], first = 16), "\n", "Version ", substring(ehelp[4], first = 16), " created on ", substring(ehelp[5], first = 16), ".\n", sep = ""))
cat("Copyright (c) 2008, Carter T. Butts, University of California-Irvine\n")
cat("For citation information, type citation(\"yacca\").\n")
cat("Type help(\"yacca-package\") to get started.\n")
Package startup functions should use ‘packageStartupMessage’ to
generate messages.
See section ‘Good practice’ in '?.onAttach'.
F.test.cca: no visible global function definition for ‘pf’
cca: no visible global function definition for ‘cov’
cca: no visible binding for global variable ‘sd’
cca: no visible global function definition for ‘cor’
helio.plot: no visible global function definition for ‘plot.new’
helio.plot: no visible global function definition for ‘plot.window’
helio.plot: no visible global function definition for ‘lines’
helio.plot: no visible global function definition for ‘text’
helio.plot: no visible global function definition for ‘polygon’
helio.plot: no visible global function definition for ‘title’
plot.cca: no visible global function definition for ‘par’
plot.cca: no visible global function definition for ‘plot’
plot.cca: no visible global function definition for ‘abline’
plot.cca: no visible global function definition for ‘text’
plot.cca: no visible global function definition for ‘barplot’
plot.cca: no visible global function definition for ‘rainbow’
print.F.test.cca: no visible global function definition for
‘printCoefmat’
print.summary.cca: no visible global function definition for ‘pchisq’
print.summary.cca: no visible global function definition for
‘printCoefmat’
Undefined global functions or variables:
abline barplot cor cov lines par pchisq pf plot plot.new plot.window
polygon printCoefmat rainbow sd text title
Consider adding
importFrom("grDevices", "rainbow")
importFrom("graphics", "abline", "barplot", "lines", "par", "plot",
"plot.new", "plot.window", "polygon", "text", "title")
importFrom("stats", "cor", "cov", "pchisq", "pf", "printCoefmat", "sd")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in ‘yacca-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cca
> ### Title: Canonical Correlation Analysis
> ### Aliases: cca print.cca print.summary.cca summary.cca plot.cca
> ### Keywords: models multivariate
>
> ### ** Examples
>
> #Example parallels the R builtin cancor example
> data(LifeCycleSavings)
> pop <- LifeCycleSavings[, 2:3]
> oec <- LifeCycleSavings[, -(2:3)]
> cca.fit <- cca(pop, oec)
>
> #View the results
> cca.fit
$corr
CV 1 CV 2
0.8247966 0.3652762
$corrsq
CV 1 CV 2
0.6802894 0.1334267
$xcoef
CV 1 CV 2
pop15 -0.06377599 -0.2535544
pop75 0.34053260 -1.8221811
$ycoef
CV 1 CV 2
sr 0.0592971550 0.2336554912
dpi 0.0009151786 -0.0005311762
ddpi 0.0291942000 -0.0858752749
$canvarx
CV 1 CV 2
Australia 0.56253600 0.40390249
Austria 1.47152544 -0.87332319
Belgium 1.44772362 -1.03147293
Bolivia -0.64585407 -0.58905269
Brazil -0.95103425 0.86551308
Canada 0.40457624 -0.16057787
Chile -0.62111144 0.55740907
China -1.16878601 0.50796273
Colombia -1.15651493 -0.68190575
Costa Rica -1.19304831 -1.08123466
Denmark 1.23791620 -0.27758614
Ecuador -1.09119961 -0.83511633
Finland 0.48857145 1.69786021
France 1.45930966 -1.84294039
Germany 1.11119865 1.06072429
Greece 0.87874295 0.93055884
Guatamala -1.18358828 -0.18609424
Honduras -1.36333825 0.02032415
Iceland 0.33557620 -1.16539024
India -0.85064214 0.85175743
Ireland 0.89660448 -2.46031003
Italy 1.07829893 0.51703990
Japan 0.38486053 2.74651367
Korea -0.89509245 0.83383808
Luxembourg 1.33690279 0.75116267
Malta 0.22287754 0.32393631
Norway 1.05180046 -0.19175733
Netherlands 0.98785900 0.88796621
New Zealand 0.45678604 -0.96933925
Nicaragua -1.00339345 -0.54954583
Panama -0.91241030 -0.15606348
Paraguay -0.81170333 0.72072321
Peru -0.92534657 -0.46157725
Philippines -1.11184809 -0.69488593
Portugal 0.58059799 0.53923234
South Africa 0.19644195 0.82228337
South Rhodesia -0.06108731 2.21221207
Spain 0.66521535 0.81212511
Sweden 1.63569355 -0.63352441
Switzerland 1.22912136 0.32265569
Turkey -0.94434558 0.09809587
Tunisia -1.07227152 -0.82338461
United Kingdom 1.49174087 -0.95175452
United States 0.72389730 -0.73315394
Venezuela -1.19569390 -0.32950372
Zambia -1.23813259 0.58162543
Jamaica -0.57631460 -0.50314665
Uruguay 0.58926282 0.98656605
Libya -0.62443782 -1.77432308
Malaysia -1.32844252 -0.09502380
$canvary
CV 1 CV 2
Australia 1.197582618 -0.16236396
Austria 0.514485534 0.33260994
Belgium 1.126047497 0.28011657
Bolivia -1.175575433 -0.12494843
Brazil -0.132491457 0.88183195
Canada 1.625987352 -1.08839364
Chile -0.975882427 -1.79030274
China -0.535391632 0.71855258
Colombia -1.057642399 -0.59695499
Costa Rica -0.543808669 0.67893036
Denmark 1.704368254 0.91924174
Ecuador -1.155871496 -0.85121380
Finland 0.635218480 0.01315294
France 1.211470012 0.04020705
Germany 1.397266488 -0.01731182
Greece -0.083021015 0.14211897
Guatamala -1.209216281 -0.92679302
Honduras -0.933602822 0.05262497
Iceland 0.150891245 -2.15783934
India -1.036015081 0.57429510
Ireland 0.106933726 0.43825829
Italy 0.526164584 0.94515342
Japan 0.945445589 2.20814404
Korea -1.100359257 -1.02841475
Luxembourg 1.205145263 -0.36666114
Malta 0.009000439 1.25130272
Norway 1.059225255 -0.45008336
Netherlands 0.989337775 0.49151632
New Zealand 0.349384397 0.20271478
Nicaragua -0.892846437 -0.02931829
Panama -0.807040147 -0.92369850
Paraguay -1.344342456 -1.08273725
Peru -0.557284192 1.34827236
Philippines -0.740722188 1.38450895
Portugal -0.206695290 0.61907452
South Africa -0.375656978 0.71988759
South Rhodesia -0.619330744 1.45344991
Spain -0.167542079 0.61909114
Sweden 1.818231179 -1.75733210
Switzerland 1.628446935 0.32307189
Turkey -0.948826794 -0.61162985
Tunisia -1.267754398 -0.92230572
United Kingdom 0.485816535 -0.66038997
United States 2.486211894 -1.91878127
Venezuela -0.389454702 0.32762273
Zambia -0.318834488 2.47265581
Jamaica -0.591415820 -0.62589387
Uruguay -0.391732707 0.24124982
Libya -0.567959967 -0.77253487
Malaysia -1.046343696 -0.81375377
$xstructcorr
CV 1 CV 2
pop15 -0.9829821 -0.1837015
pop75 0.9697929 -0.2439299
$ystructcorr
CV 1 CV 2
sr 0.4910379 0.8557760
dpi 0.9545172 -0.2637266
ddpi 0.0473377 0.1407737
$xstructcorrsq
CV 1 CV 2
pop15 0.9662538 0.03374625
pop75 0.9404982 0.05950179
$ystructcorrsq
CV 1 CV 2
sr 0.241118178 0.73235251
dpi 0.911103077 0.06955175
ddpi 0.002240858 0.01981724
$xcrosscorr
CV 1 CV 2
pop15 -0.8107603 -0.06710179
pop75 0.7998819 -0.08910177
$ycrosscorr
CV 1 CV 2
sr 0.40500636 0.31259455
dpi 0.78728255 -0.09633306
ddpi 0.03904398 0.05142128
$xcrosscorrsq
CV 1 CV 2
pop15 0.6573322 0.004502650
pop75 0.6398110 0.007939126
$ycrosscorrsq
CV 1 CV 2
sr 0.164030152 0.097715355
dpi 0.619813811 0.009280058
ddpi 0.001524432 0.002644148
$xcancom
pop15 pop75
1 1
$ycancom
sr dpi ddpi
0.97347069 0.98065482 0.02205809
$xcanvad
CV 1 CV 2
0.95337598 0.04662402
$ycanvad
CV 1 CV 2
0.3848207 0.2739072
$xvrd
CV 1 CV 2
0.648571620 0.006220888
$yvrd
CV 1 CV 2
0.26178947 0.03654652
$xrd
[1] 0.6547925
$yrd
[1] 0.298336
$chisq
CV 1 CV 2
59.043197 6.587593
$df
CV 1 CV 2
6 2
$xlab
[1] "pop15" "pop75"
$ylab
[1] "sr" "dpi" "ddpi"
attr(,"class")
[1] "cca"
> summary(cca.fit)
Length Class Mode
corr 2 -none- numeric
corrsq 2 -none- numeric
xcoef 4 -none- numeric
ycoef 6 -none- numeric
canvarx 100 -none- numeric
canvary 100 -none- numeric
xstructcorr 4 -none- numeric
ystructcorr 6 -none- numeric
xstructcorrsq 4 -none- numeric
ystructcorrsq 6 -none- numeric
xcrosscorr 4 -none- numeric
ycrosscorr 6 -none- numeric
xcrosscorrsq 4 -none- numeric
ycrosscorrsq 6 -none- numeric
xcancom 2 -none- numeric
ycancom 3 -none- numeric
xcanvad 2 -none- numeric
ycanvad 2 -none- numeric
xvrd 2 -none- numeric
yvrd 2 -none- numeric
xrd 1 -none- numeric
yrd 1 -none- numeric
chisq 2 -none- numeric
df 2 -none- numeric
xlab 2 -none- character
ylab 3 -none- character
> plot(cca.fit)
Error in xy.coords(x, y, xlabel, ylabel, log) :
'x' is a list, but does not have components 'x' and 'y'
Calls: plot -> plot.default -> xy.coords
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64