CRAN Package Check Results for Package yacca

Last updated on 2015-07-29 23:47:34.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1 0.59 10.07 10.66 NOTE
r-devel-linux-x86_64-debian-gcc 1.1 0.50 9.99 10.49 NOTE
r-devel-linux-x86_64-fedora-clang 1.1 19.25 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1 18.44 NOTE
r-devel-osx-x86_64-clang 1.1 19.16 NOTE
r-devel-windows-ix86+x86_64 1.1 2.00 19.00 21.00 NOTE
r-patched-linux-x86_64 1.1 0.70 10.36 11.06 NOTE
r-patched-solaris-sparc 1.1 130.90 NOTE
r-patched-solaris-x86 1.1 29.00 NOTE
r-release-linux-x86_64 1.1 0.53 10.11 10.64 NOTE
r-release-osx-x86_64-mavericks 1.1 NOTE
r-release-windows-ix86+x86_64 1.1 2.00 18.00 20.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1 3.00 20.00 23.00 NOTE

Check Details

Version: 1.1
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘CONTRIBUTORS’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.cca print.F.test.cca print.cca print.summary.cca summary.cca
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    NB: .First.lib is obsolete and will not be used in R >= 3.0.0
    File ‘yacca/R/zzz.R’:
     .First.lib calls:
     cat(paste("'", ehelp[4], "'\n", "Version ", ehelp[2], " created on ", ehelp[3], ".\n", sep = ""))
     cat(paste(substring(ehelp[3], first = 16), "\n", "Version ", substring(ehelp[4], first = 16), " created on ", substring(ehelp[5], first = 16), ".\n", sep = ""))
     cat("Copyright (c) 2008, Carter T. Butts, University of California-Irvine\n")
     cat("For citation information, type citation(\"yacca\").\n")
     cat("Type help(\"yacca-package\") to get started.\n")
    
    Package startup functions should use ‘packageStartupMessage’ to
     generate messages.
    See section ‘Good practice’ in '?.onAttach'.
    
    F.test.cca: no visible global function definition for ‘pf’
    cca: no visible global function definition for ‘cov’
    cca: no visible binding for global variable ‘sd’
    cca: no visible global function definition for ‘cor’
    helio.plot: no visible global function definition for ‘plot.new’
    helio.plot: no visible global function definition for ‘plot.window’
    helio.plot: no visible global function definition for ‘lines’
    helio.plot: no visible global function definition for ‘text’
    helio.plot: no visible global function definition for ‘polygon’
    helio.plot: no visible global function definition for ‘title’
    plot.cca: no visible global function definition for ‘par’
    plot.cca: no visible global function definition for ‘plot’
    plot.cca: no visible global function definition for ‘abline’
    plot.cca: no visible global function definition for ‘text’
    plot.cca: no visible global function definition for ‘barplot’
    plot.cca: no visible global function definition for ‘rainbow’
    print.F.test.cca: no visible global function definition for
     ‘printCoefmat’
    print.summary.cca: no visible global function definition for ‘pchisq’
    print.summary.cca: no visible global function definition for
     ‘printCoefmat’
    Undefined global functions or variables:
     abline barplot cor cov lines par pchisq pf plot plot.new plot.window
     polygon printCoefmat rainbow sd text title
    Consider adding
     importFrom("grDevices", "rainbow")
     importFrom("graphics", "abline", "barplot", "lines", "par", "plot",
     "plot.new", "plot.window", "polygon", "text", "title")
     importFrom("stats", "cor", "cov", "pchisq", "pf", "printCoefmat", "sd")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    NB: .First.lib is obsolete and will not be used in R >= 3.0.0
    File ‘yacca/R/zzz.R’:
     .First.lib calls:
     cat(paste("'", ehelp[4], "'\n", "Version ", ehelp[2], " created on ", ehelp[3], ".\n", sep = ""))
     cat(paste(substring(ehelp[3], first = 16), "\n", "Version ", substring(ehelp[4], first = 16), " created on ", substring(ehelp[5], first = 16), ".\n", sep = ""))
     cat("Copyright (c) 2008, Carter T. Butts, University of California-Irvine\n")
     cat("For citation information, type citation(\"yacca\").\n")
     cat("Type help(\"yacca-package\") to get started.\n")
    
    Package startup functions should use ‘packageStartupMessage’ to
     generate messages.
    See section ‘Good practice’ in '?.onAttach'.
Flavors: r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64