Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm CRAN Task View: Genetics (http://CRAN.R-project.org/view=Genetics) The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs. Software Depends: R (>= 2.6.0), stats K. Burkett <kburkett@sfu.ca> K. Burkett <kburkett@sfu.ca>, B. McNeney <mcneney@sfu.ca>, J. Graham <jgraham@stat.sfu.ca>, with code for case-control data contributed by Zhijian Chen <z11chen@math.uwaterloo.ca> GPL-2 2012-04-05 application/tgz http://CRAN.R-project.org/package=hapassoc