Protein Mass Spectra Processing CRAN Task View: ChemPhys (http://CRAN.R-project.org/view=ChemPhys) This package provides tools for protein mass spectra processing including data preparation, denoising, noise estimation, baseline correction, intensity normalization, peak detection, peak alignment, peak quantification, and various functionalities for data ingestion/conversion, mass calibration, data quality assessment, and protein mass spectra simulation. It also provides auxiliary tools for data representation, data visualization, and pipeline processing history recording and retrieval. Software Depends: R (>= 2.12.0), methods, graphics, wmtsa, robust, XML, stats Lixin Gong <lgong@tibco.com> Lixin Gong, William Constantine, and Yu Alex Chen GNU General Public License Version 2 2011-02-08 application/tgz http://CRAN.R-project.org/package=msProcess