Ready-to-Use Omics Formatting, Analysis, and Visualization Pipeline R package readyomics version 0.2.1 Provides a flexible and streamlined pipeline for formatting, analyzing, and visualizing omics data, regardless of omics type (e.g. transcriptomics, proteomics, metabolomics). The package includes tools for shaping input data into analysis-ready structures, fitting linear or mixed-effect models, extracting key contrasts, and generating a rich variety of ready-to-use publication-quality plots. Designed for transparency and reproducibility across a wide range of study designs, with customizable components for statistical modeling. Software Depends: R (>= 4.1.0) Imports: dplyr, future, future.apply, ggplot2, lme4, lmerTest, methods, permute, rlang, stats, stringr, tidyr, utils, vegan, zCompositions Suggests: ape, data.table, ggrepel, ggridges, IHW, imputeLCMD, knitr, phyloseq, progressr, purrr, qvalue, reformulas, rmarkdown, ropls, scales, testthat (>= 3.0.0) Laura Martinez-Gili <martinez.gili.laura@gmail.com> Comprehensive R Archive Network (CRAN) Laura Martinez-Gili [cre, aut, cph] MIT + file LICENSE (https://CRAN.R-project.org/package=readyomics/LICENSE) 2026-06-24 application/tgz https://CRAN.R-project.org/package=readyomics doi:10.32614/CRAN.package.readyomics