ABC.RAP: Array Based CpG Region Analysis Pipeline

It aims to identify candidate genes that are “differentially methylated” between cases and controls. It applies Student’s t-test and delta beta analysis to identify candidate genes containing multiple “CpG sites”.

Version: 0.9.0
Depends: R (≥ 3.1.0)
Imports: graphics, stats, utils
Suggests: knitr, rmarkdown
Published: 2016-10-20
Author: Abdulmonem Alsaleh [cre, aut], Robert Weeks [aut], Ian Morison [aut], RStudio [ctb]
Maintainer: Abdulmonem Alsaleh <a.alsaleh at hotmail.co.nz>
Contact: Ian Morison <ian.morison@otago.ac.nz>
License: GPL-3
NeedsCompilation: no
SystemRequirements: GNU make
CRAN checks: ABC.RAP results

Downloads:

Reference manual: ABC.RAP.pdf
Vignettes: Array Based CpG Region Analysis Package (ABC.RAP)
Package source: ABC.RAP_0.9.0.tar.gz
Windows binaries: r-devel: ABC.RAP_0.9.0.zip, r-release: ABC.RAP_0.9.0.zip, r-oldrel: ABC.RAP_0.9.0.zip
OS X Mavericks binaries: r-release: ABC.RAP_0.9.0.tgz, r-oldrel: ABC.RAP_0.9.0.tgz

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