BPEC: Bayesian Phylogeographic and Ecological Clustering

Model-based clustering for phylogeographic data comprising mtDNA sequences and geographical locations along with optional environmental characteristics, aiming to identify migration events that led to homogeneous population clusters. The package vignette, I. Manolopoulou, A. Hille, B. C. Emerson (2020) <doi:10.18637/jss.v092.i03>, provides detailed descriptions of the package.

Version: 1.3.1
Depends: R (≥ 3.5.0)
Imports: ggplot2, igraph, mvtnorm, maptools, sp, phytools, fields, coda, methods, OpenStreetMap, ggmap, ape, utils
Published: 2020-03-02
Author: Ioanna Manolopoulou, Axel Hille
Maintainer: Ioanna Manolopoulou <ioanna.manolopoulou at gmail.com>
License: GPL-2
NeedsCompilation: yes
Citation: BPEC citation info
Materials: README
CRAN checks: BPEC results

Downloads:

Reference manual: BPEC.pdf
Vignettes: User manual
Package source: BPEC_1.3.1.tar.gz
Windows binaries: r-devel: BPEC_1.3.1.zip, r-devel-gcc8: BPEC_1.3.1.zip, r-release: BPEC_1.3.1.zip, r-oldrel: BPEC_1.3.1.zip
OS X binaries: r-release: BPEC_1.3.1.tgz, r-oldrel: BPEC_1.3.1.tgz
Old sources: BPEC archive

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