BioMark: Find biomarkers in two-class discrimination problems

The package provides biomarker selection for several classification methods: the lasso/elastic net, PCLDA, PLSDA, and several t-tests. Two approaches are provided, one based on the stability of model coefficients under perturbation, and the other on higher criticism.

Version: 0.4.2
Depends: pls, glmnet, MASS, st (≥ 1.1.6)
Published: 2014-08-06
Author: Ron Wehrens, Pietro Franceschi
Maintainer: Ron Wehrens <ron.wehrens at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Citation: NA
Materials: NA
In views: ChemPhys
CRAN checks: BioMark results

Downloads:

Reference manual: BioMark.pdf
Package source: BioMark_0.4.2.tar.gz
Windows binaries: r-devel: BioMark_0.4.2.zip, r-release: BioMark_0.4.2.zip, r-oldrel: BioMark_0.4.2.zip
OS X Snow Leopard binaries: r-release: BioMark_0.4.2.tgz, r-oldrel: BioMark_0.4.2.tgz
OS X Mavericks binaries: r-release: BioMark_0.4.2.tgz
Old sources: BioMark archive