CNprep: pre-process DNA copy number (CN) data for detection of CN events

The package evaluates DNA copy number data, using both their intitial form (copy number as a noisy function of genomic position) and their approximation by a piecewise-constant function (segmentation), for the purpose of identifying genomic regions where the copy number differs from the norm.

Version: 1.0
Depends: R (≥ 2.10), parallel, mclust, rlecuyer
Published: 2013-06-20
Author: Alex Krasnitz, Guoli Sun
Maintainer: Guoli Sun <gsun at cshl.edu>
License: GPL-2
NeedsCompilation: no
CRAN checks: CNprep results

Downloads:

Reference manual: CNprep.pdf
Package source: CNprep_1.0.tar.gz
Windows binaries: r-devel: CNprep_1.0.zip, r-release: CNprep_1.0.zip, r-oldrel: CNprep_1.0.zip
OS X Snow Leopard binaries: r-release: CNprep_1.0.tgz, r-oldrel: CNprep_1.0.tgz
OS X Mavericks binaries: r-release: CNprep_1.0.tgz