To cite the package 'CONOR' in publications, please use two or more of the following.

For the package itself, or for a comparison of different normalization methods, please cite:

@article{, title = {Empirical comparison of cross-platform normalization methods for gene expression data}, author = {Jason Rudy and Faramarz Valafar}, journal = {BMC Bioinformatics}, year = {In progress}, }

For the distran method, please cite:

@Article{, title = {Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes}, author = {H Jiang and Y Deng and H Chen and L Tao and Q Sha}, journal = {BMC Bioinformatics}, year = {2004}, volume = {5}, pages = {81}, }

For the dwd method, please cite:

@article{, title = {Adjustment of systematic microarray data biases}, author = {M Benito and J Parker and Q Du and J Wu and D Xiang and CM Perou and JS Marron}, journal = {Bioinformatics}, year = {2004}, volume = {20}, pages = {105}, }

For the eb method, please cite:

@article{, title = {Adjusting batch effects in microarray expression data using empirical Bayes methods}, author = {W Johnson and C Li and A Rabinovic}, journal = {Biostatistics}, year = {2007}, volume = {8}, number = {1}, pages = {118}, }

For the gq method, please cite:

@article{, title = {WebArrayDB: cross-platform microarray data analysis and public data repository}, author = {XQ Xia and M Mcclelland and A Porwollik and W Song and X Cong and Y Wang}, journal = {Bioinformatics}, year = {2009}, volume = {25}, number = {18}, pages = {2425}, }

For the mrs or qd method, please cite:

@article{, title = {Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes}, author = {P Warnat and R Eils and B Brors}, journal = {BMC Bioinformatics}, year = {2005}, volume = {6}, pages = {265}, }

For the nordi method, please cite:

@article{, title = {GenMiner: mining informative association rules from genomic data}, author = {R Martinez and C Pasquier and N Pasquier}, journal = {Proceeding of the IEEE International Conference on Bioinformatics and Biomedicine}, year = {2007}, volume = {1}, pages = {15}, }

For the qn method, please cite:

@article{, title = {A comparison of normalization methods for high density oligonucleotide array data based on variance and bias}, author = {BM Bolstad and RA Irizarry and M Astrand and TP Speed}, journal = {Bioinformatics}, year = {2003}, volume = {19}, number = {2}, pages = {185}, }

For the xpn method, please cite:

@article{, title = {Merging two gene-expression studies via cross-platform normalization}, author = {AA Shabalin and H Tjelmeland and C Fan and CM Perou and AB Nobel}, journal = {Bioinformatics}, year = {2008}, volume = {24}, number = {9}, pages = {1154}, }

Corresponding BibTeX entries:

  @Article{,
    title = {Empirical comparison of cross-platform normalization
      methods for gene expression data},
    author = {Jason Rudy and Faramarz Valafar},
    journal = {BMC Bioinformatics},
    year = {In progress},
  }

  @Article{,
    title = {Joint analysis of two microarray gene-expression data sets
      to select lung adenocarcinoma marker genes},
    author = {H Jiang and Y Deng and H Chen and L Tao and Q Sha},
    journal = {BMC Bioinformatics},
    year = {2004},
    volume = {5},
    pages = {81},
  }

  @Article{,
    title = {Adjustment of systematic microarray data biases},
    author = {M Benito and J Parker and Q Du and J Wu and D Xiang and
      CM Perou and JS Marron},
    journal = {Bioinformatics},
    year = {2004},
    volume = {20},
    pages = {105},
  }

  @Article{,
    title = {Adjusting batch effects in microarray expression data
      using empirical Bayes methods},
    author = {W Johnson and C Li and A Rabinovic},
    journal = {Biostatistics},
    year = {2007},
    volume = {8},
    number = {1},
    pages = {118},
  }

  @Article{,
    title = {WebArrayDB: cross-platform microarray data analysis and
      public data repository},
    author = {XQ Xia and M Mcclelland and A Porwollik and W Song and X
      Cong and Y Wang},
    journal = {Bioinformatics},
    year = {2009},
    volume = {25},
    number = {18},
    pages = {2425},
  }

  @Article{,
    title = {Cross-platform analysis of cancer microarray data improves
      gene expression based classification of phenotypes},
    author = {P Warnat and R Eils and B Brors},
    journal = {BMC Bioinformatics},
    year = {2005},
    volume = {6},
    pages = {265},
  }

  @Article{,
    title = {GenMiner: mining informative association rules from
      genomic data},
    author = {R Martinez and C Pasquier and N Pasquier},
    journal = {Proceeding of the IEEE International Conference on
      Bioinformatics and Biomedicine},
    year = {2007},
    volume = {1},
    pages = {15},
  }

  @Article{,
    title = {A comparison of normalization methods for high density
      oligonucleotide array data based on variance and bias},
    author = {BM Bolstad and RA Irizarry and M Astrand and TP Speed},
    journal = {Bioinformatics},
    year = {2003},
    volume = {19},
    number = {2},
    pages = {185},
  }

  @Article{,
    title = {Merging two gene-expression studies via cross-platform
      normalization},
    author = {AA Shabalin and H Tjelmeland and C Fan and CM Perou and
      AB Nobel},
    journal = {Bioinformatics},
    year = {2008},
    volume = {24},
    number = {9},
    pages = {1154},
  }