DetSel: A computer program to detect markers responding to selection

In the new era of population genomics, surveys of genetic polymorphism ("genome scans") offer the opportunity to distinguish locus-specific from genome wide effects at many loci. Identifying presumably neutral regions of the genome that are assumed to be influenced by genome-wide effects only, and excluding presumably selected regions, is therefore critical to infer population demography and phylogenetic history reliably. Conversely, detecting locus-specific effects may help identify those genes that have been, or still are, targeted by natural selection. The software package DetSel has been developed to identify markers that show deviation from neutral expectation in pairwise comparisons of diverging populations.

Version: 1.0.2
Depends: R (≥ 2.15), ash
Published: 2013-04-24
Author: Renaud Vitalis.
Maintainer: Renaud Vitalis <vitalis at supagro.inra.fr>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Materials: ChangeLog
CRAN checks: DetSel results

Downloads:

Reference manual: DetSel.pdf
Package source: DetSel_1.0.2.tar.gz
MacOS X binary: DetSel_1.0.2.tgz
Windows binary: DetSel_1.0.2.zip
Old sources: DetSel archive