DrImpute: Imputing Dropout Events in Single-Cell RNA-Sequencing Data

R codes for imputing dropout events. Many statistical methods in cell type identification, visualization and lineage reconstruction do not account for dropout events ('PCAreduce', 'SC3', 'PCA', 't-SNE', 'Monocle', 'TSCAN', etc). 'DrImpute' can improve the performance of such software by imputing dropout events.

Version: 1.0
Depends: R (≥ 3.1.0)
Imports: Rcpp
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, devtools, roxygen2, irlba
Published: 2017-07-15
Author: Il-Youp Kwak with contributions from Wuming Gong
Maintainer: Il-Youp Kwak <ilyoup.kwak at gmail.com>
License: GPL-3
URL: https://github.com/ikwak2/DrImpute
NeedsCompilation: yes
Materials: README
CRAN checks: DrImpute results

Downloads:

Reference manual: DrImpute.pdf
Vignettes: DrImpute : imputing dropout events in single-cell RNA-sequencing data
Package source: DrImpute_1.0.tar.gz
Windows binaries: r-devel: DrImpute_1.0.zip, r-release: DrImpute_1.0.zip, r-oldrel: DrImpute_1.0.zip
OS X El Capitan binaries: r-release: DrImpute_1.0.tgz
OS X Mavericks binaries: r-oldrel: DrImpute_1.0.tgz

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