EnrichIntersect: Enrichment Analysis and Intersecting Sankey Diagram

A flexible tool for enrichment analysis based on user-defined sets. It allows users to perform over-representation analysis of the custom sets among any specified ranked feature list, hence making enrichment analysis applicable to various types of data from different scientific fields. 'EnrichIntersect' also enables an interactive means to visualize identified associations based on, for example, the mix-lasso model (Zhao et al. (2022) <doi:10.1016/j.isci.2022.104767>) or similar methods.

Version: 0.2
Depends: R (≥ 4.0)
Imports: ggplot2, dplyr, networkD3, jsonlite, htmlwidgets, webshot2, grDevices, methods
Suggests: knitr
Published: 2022-08-10
Author: Zhi Zhao [aut, cre], Manuela Zucknick [aut], Tero Aittokallio [ctb]
Maintainer: Zhi Zhao <zhi.zhao at medisin.uio.no>
BugReports: https://github.com/zhizuio/EnrichIntersect/issues
License: MIT + file LICENSE
URL: https://github.com/zhizuio/EnrichIntersect
NeedsCompilation: no
Citation: EnrichIntersect citation info
Materials: NEWS
CRAN checks: EnrichIntersect results

Documentation:

Reference manual: EnrichIntersect.pdf
Vignettes: EnrichIntersect

Downloads:

Package source: EnrichIntersect_0.2.tar.gz
Windows binaries: r-devel: EnrichIntersect_0.1.zip, r-release: EnrichIntersect_0.1.zip, r-oldrel: EnrichIntersect_0.1.zip
macOS binaries: r-release (arm64): EnrichIntersect_0.1.tgz, r-oldrel (arm64): EnrichIntersect_0.1.tgz, r-release (x86_64): EnrichIntersect_0.1.tgz, r-oldrel (x86_64): EnrichIntersect_0.1.tgz
Old sources: EnrichIntersect archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=EnrichIntersect to link to this page.