ExomeDepth: Calls Copy Number Variants from Targeted Sequence Data

Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders.

Version: 1.1.4
Depends: R (≥ 3.1.0)
Imports: Biostrings, IRanges, Rsamtools, GenomicRanges (≥ 1.16.0), aod, VGAM (≥ 0.8.4), methods, GenomicAlignments
Suggests: knitr
Published: 2015-01-23
Author: Vincent Plagnol
Maintainer: Vincent Plagnol <v.plagnol at ucl.ac.uk>
License: GPL-3
NeedsCompilation: yes
CRAN checks: ExomeDepth results

Downloads:

Reference manual: ExomeDepth.pdf
Vignettes: Using ExomeDepth
Package source: ExomeDepth_1.1.4.tar.gz
Windows binaries: r-devel: ExomeDepth_1.1.4.zip, r-release: ExomeDepth_1.1.4.zip, r-oldrel: ExomeDepth_1.1.4.zip
OS X Snow Leopard binaries: r-release: not available, r-oldrel: ExomeDepth_1.0.7.tgz
OS X Mavericks binaries: r-release: not available
Old sources: ExomeDepth archive