ExomeDepth: Calls Copy Number Variants from Targeted Sequence Data

Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders.

Version: 1.1.4
Depends: R (≥ 3.1.0)
Imports: Biostrings, IRanges, Rsamtools, GenomicRanges (≥ 1.16.0), aod, VGAM (≥ 0.8.4), methods, GenomicAlignments
Suggests: knitr
Published: 2015-01-23
Author: Vincent Plagnol
Maintainer: Vincent Plagnol <v.plagnol at ucl.ac.uk>
License: GPL-3
NeedsCompilation: yes
CRAN checks: ExomeDepth results


Reference manual: ExomeDepth.pdf
Vignettes: Using ExomeDepth
Package source: ExomeDepth_1.1.4.tar.gz
Windows binaries: r-devel: ExomeDepth_1.1.4.zip, r-release: ExomeDepth_1.1.4.zip, r-oldrel: ExomeDepth_1.0.7.zip
OS X Snow Leopard binaries: r-release: ExomeDepth_1.0.7.tgz, r-oldrel: ExomeDepth_1.0.7.tgz
OS X Mavericks binaries: r-release: ExomeDepth_1.1.1.tgz
Old sources: ExomeDepth archive