FIT: Transcriptomic Dynamics Models in Field Conditions

Provides functionality for constructing statistical models of transcriptomic dynamics in field conditions. It further offers the function to predict expression of a gene given the attributes of samples and meteorological data. Nagano, A. J., Sato, Y., Mihara, M., Antonio, B. A., Motoyama, R., Itoh, H., Naganuma, Y., and Izawa, T. (2012). <doi:10.1016/j.cell.2012.10.048>. Iwayama, K., Aisaka, Y., Kutsuna, N., and Nagano, A. J. (2017). <doi:10.1093/bioinformatics/btx049>.

Version: 0.0.5
Depends: R (≥ 3.2.2)
Imports: methods, Rcpp (≥ 0.11.2), XML, gglasso (≥ 1.4), MASS
LinkingTo: Rcpp, RcppEigen (≥ 0.3.2.1.2)
Suggests: knitr, rmarkdown
Published: 2018-05-08
Author: Koji Iwayama [cre], Yuri Aisaka [aut]
Maintainer: Koji Iwayama <fieldtranscriptome at gmail.com>
License: MPL (≥ 2) | file LICENSE
NeedsCompilation: yes
SystemRequirements: C++11
CRAN checks: FIT results

Downloads:

Reference manual: FIT.pdf
Vignettes: FIT
Package source: FIT_0.0.5.tar.gz
Windows binaries: r-devel: FIT_0.0.5.zip, r-release: FIT_0.0.5.zip, r-oldrel: FIT_0.0.5.zip
OS X binaries: r-release: FIT_0.0.5.tgz, r-oldrel: FIT_0.0.5.tgz
Old sources: FIT archive

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