GillespieSSA: Gillespie's Stochastic Simulation Algorithm (SSA)
GillespieSSA provides a simple to use, intuitive, and
extensible interface to several stochastic simulation
algorithms for generating simulated trajectories of finite
population continuous-time model. Currently it implements
Gillespie's exact stochastic simulation algorithm (Direct
method) and several approximate methods (Explicit tau-leap,
Binomial tau-leap, and Optimized tau-leap). The package also
contains a library of template models that can be run as demo
models and can easily be customized and extended. Currently the
following models are included, decaying-dimerization reaction
set, linear chain system, logistic growth model, Lotka
predator-prey model, Rosenzweig-MacArthur predator-prey model,
Kermack-McKendrick SIR model, and a metapopulation SIRS model.
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