GxEScanR: Run GWAS/GWEIS Scans Using Binary Dosage Files

Tools to run genome-wide association study (GWAS) and genome-wide by environment interaction study (GWEIS) scans using the genetic data stored in a binary dosage file. The user provides a data frame with the subject's covariate data and the information about the binary dosage file returned by the BinaryDosage::getbdinfo() routine.

Version: 2.0.2
Imports: Rcpp (≥ 1.0.4), prodlim
LinkingTo: Rcpp, RcppArmadillo
Suggests: BinaryDosage, testthat (≥ 2.1.0), covr, knitr, rmarkdown
Published: 2020-10-02
Author: John Morrison [aut, cre], NCI [fnd] (CA196559), NCI [fnd] (CA201407), NIEHS [fnd] (ES007048), NHLBI [fnd] (HL115606)
Maintainer: John Morrison <jmorr at usc.edu>
License: GPL-3
NeedsCompilation: yes
Language: en-US
Materials: NEWS
CRAN checks: GxEScanR results

Downloads:

Reference manual: GxEScanR.pdf
Vignettes: Using GxEScanR
Package source: GxEScanR_2.0.2.tar.gz
Windows binaries: r-devel: GxEScanR_2.0.2.zip, r-release: GxEScanR_2.0.2.zip, r-oldrel: GxEScanR_2.0.2.zip
macOS binaries: r-release: GxEScanR_2.0.2.tgz, r-oldrel: GxEScanR_2.0.2.tgz
Old sources: GxEScanR archive

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