The package provides a set of functions whose aim is to propose 4 methods of QTL detection. HAPimLD is an interval-mapping method designed for unrelated individuals with no family information that makes use of linkage disequilibrium. HAPimLDL is an interval-mapping method for design of half-sib families. It combines linkage analysis and linkage disequilibrium. HaploMax is based on an analysis of variance with a dose haplotype effect. HaploMaxHS is based on an analysis of variance with a sire effect and a dose haplotype effect in half-sib family design. Fundings for the package development were provided to the LDLmapQTL project by the ANR GENANIMAL program and APIS-GENE.
| Version: | 1.2 |
| Date: | 2008-09-01 |
| Author: | S. Dejean, N. Oumouhou, D. Estivals, B. Mangin |
| Maintainer: | Brigitte Mangin <brigitte.mangin at toulouse.inra.fr> |
| License: | GPL |
| CRAN checks: | HAPim results |
Downloads:
| Package source: | HAPim_1.2.tar.gz |
| MacOS X binary: | HAPim_1.2.tgz |
| Windows binary: | HAPim_1.2.zip |
| Reference manual: | HAPim.pdf |
| Old sources: | HAPim archive |