HAPim: HapIM

The package provides a set of functions whose aim is to propose 4 methods of QTL detection. HAPimLD is an interval-mapping method designed for unrelated individuals with no family information that makes use of linkage disequilibrium. HAPimLDL is an interval-mapping method for design of half-sib families. It combines linkage analysis and linkage disequilibrium. HaploMax is based on an analysis of variance with a dose haplotype effect. HaploMaxHS is based on an analysis of variance with a sire effect and a dose haplotype effect in half-sib family design. Fundings for the package development were provided to the LDLmapQTL project by the ANR GENANIMAL program and APIS-GENE.

Version: 1.3
Published: 2012-10-29
Author: S. Dejean, N. Oumouhou, D. Estivals, B. Mangin
Maintainer: Brigitte Mangin <brigitte.mangin at toulouse.inra.fr>
License: GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation: no
CRAN checks: HAPim results

Downloads:

Reference manual: HAPim.pdf
Package source: HAPim_1.3.tar.gz
Windows binaries: r-devel: HAPim_1.3.zip, r-release: HAPim_1.3.zip, r-oldrel: HAPim_1.3.zip
OS X El Capitan binaries: r-release: HAPim_1.3.tgz
OS X Mavericks binaries: r-oldrel: HAPim_1.3.tgz
Old sources: HAPim archive

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