HMP: Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP

This package provides several functions to perform formal hypothesis testing, and power and sample size calculations for human microbiome experiments. Dirichlet-Multinomial distribution is proposed to model species abundance and ranked abundance data.

Version: 1.3.1
Depends: R (≥ 2.13.0), MCMCpack, dirmult
Published: 2013-05-09
Author: Patricio S. La Rosa, Elena Deych, Berkley Shands, William D. Shannon
Maintainer: Berkley Shands <bshands at>
License: GPL-2
NeedsCompilation: no
Materials: NEWS
CRAN checks: HMP results


Reference manual: HMP.pdf
Package source: HMP_1.3.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: HMP_1.3.1.tgz, r-oldrel: HMP_1.3.1.tgz
OS X Mavericks binaries: r-release: HMP_1.3.1.tgz
Old sources: HMP archive

Reverse dependencies:

Reverse suggests: HMPTrees