HPOSim: Analysis semantic similarity between HPO terms and HPO-based phenotypic similarity between genes and between diseases

This package implements multiple similarity measures for HPO terms, genes and diseases. It is aiming at phenotype analysis for gene sets and disease sets. Functions for HPO enrichment analysis is also provided. The disease-term and gene-term associations contained in this version are based on the official HPO data released in January 2014.

Version: 1.2
Depends: R (≥ 2.15.1)
Imports: AnnotationDbi, HPO.db, igraph
Published: 2014-02-21
Author: Yue Deng, Gang Wang, Xiaocheng Huang, Qinhao Wu , Yang Wang and Tingting Ma
Maintainer: Yue Deng <anfdeng at 163.com>
License: GPL-2
NeedsCompilation: no
CRAN checks: HPOSim results

Downloads:

Reference manual: HPOSim.pdf
Package source: HPOSim_1.2.tar.gz
Windows binaries: r-devel: HPOSim_1.2.zip, r-release: HPOSim_1.2.zip, r-oldrel: HPOSim_1.2.zip
OS X Snow Leopard binaries: r-release: HPOSim_1.2.tgz, r-oldrel: HPOSim_1.2.tgz
OS X Mavericks binaries: r-release: HPOSim_1.2.tgz
Old sources: HPOSim archive