HyPhy: Macroevolutionary phylogentic analysis of species trees and gene trees

A Bay Area high level phylogenetic analysis package mostly using the birth-death process. Analysis of species tree branching times and simulation of species trees under a number of different time variable birth-death processes. Analysis of gene tree species tree reconciliations and simulations of gene trees in species trees.

Version: 1.0
Depends: ape, R.utils
Published: 2012-07-30
Author: Nathaniel Malachi Hallinan
Maintainer: Nathaniel Malachi Hallinan <nmhallinan at gmail.com>
License: GPL-2
NeedsCompilation: no
In views: Phylogenetics
CRAN checks: HyPhy results

Downloads:

Reference manual: HyPhy.pdf
Package source: HyPhy_1.0.tar.gz
Windows binaries: r-devel: HyPhy_1.0.zip, r-release: HyPhy_1.0.zip, r-oldrel: HyPhy_1.0.zip
OS X Snow Leopard binaries: r-release: HyPhy_1.0.tgz, r-oldrel: HyPhy_1.0.tgz
OS X Mavericks binaries: r-release: HyPhy_1.0.tgz