IBDsim: Simulation of Chromosomal Regions Shared by Family Members

Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Kong et. al (2010) <doi:10.1038/nature09525>), phased chromosomes are simulated for all pedigree members, either by unconditional gene dropping or conditional on a specified IBD pattern. Additional functions provide summaries and further analysis of the simulated genomes.

Version: 0.9-7
Depends: R (≥ 3.3), paramlink (≥ 1.1)
Imports: stats
Published: 2017-04-26
Author: Magnus Dehli Vigeland
Maintainer: Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Materials: NEWS
CRAN checks: IBDsim results

Downloads:

Reference manual: IBDsim.pdf
Package source: IBDsim_0.9-7.tar.gz
Windows binaries: r-devel: IBDsim_0.9-7.zip, r-release: IBDsim_0.9-7.zip, r-oldrel: IBDsim_0.9-7.zip
OS X El Capitan binaries: r-release: IBDsim_0.9-7.tgz
OS X Mavericks binaries: r-oldrel: IBDsim_0.9-7.tgz
Old sources: IBDsim archive

Reverse dependencies:

Reverse depends: mut

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