InfiniumPurify: Estimate and Account for Tumor Purity in Cancer Methylation Data Analysis

The proportion of cancer cells in solid tumor sample, known as the tumor purity, has adverse impact on a variety of data analyses if not properly accounted for. We develop 'InfiniumPurify', which is a comprehensive R package for estimating and accounting for tumor purity based on DNA methylation Infinium 450k array data. 'InfiniumPurify' provides functionalities for tumor purity estimation. In addition, it can perform differential methylation detection and tumor sample clustering with the consideration of tumor purities.

Version: 1.3.1
Depends: matrixStats
Published: 2017-01-14
Author: Yufang Qin
Maintainer: Yufang Qin <yfqin at shou.edu.cn>
License: GPL-2
NeedsCompilation: no
CRAN checks: InfiniumPurify results

Downloads:

Reference manual: InfiniumPurify.pdf
Package source: InfiniumPurify_1.3.1.tar.gz
Windows binaries: r-devel: InfiniumPurify_1.3.1.zip, r-release: InfiniumPurify_1.3.1.zip, r-oldrel: InfiniumPurify_1.3.1.zip
OS X El Capitan binaries: r-release: InfiniumPurify_1.3.1.tgz
OS X Mavericks binaries: r-oldrel: InfiniumPurify_1.3.1.tgz

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